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Burkholderia cenocepacia
Representative genome: Burkholderia cenocepacia
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ID: 475

Organism Overview ; Genome Assembly and Annotation report [351] ; Genome Tree report [325] ; Plasmid Annotation Report [11]

Burkholderia cenocepacia

Opportunistic pathogen

Lineage: Bacteria[30000]; Proteobacteria[9783]; Betaproteobacteria[1408]; Burkholderiales[894]; Burkholderiaceae[259]; Burkholderia[41]; Burkholderia cepacia complex[23]; Burkholderia cenocepacia[1]

Burkholderia cenocepacia. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

Summary

Sequence data:

genome assemblies: 351; sequence reads: 26

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 7.95029

median protein count: 7063

median GC%: 67

Publications (limited to 20 most recent records)

Burkholderia cepacia Complex Taxon K: Where to Split? Depoorter E, et al. Front Microbiol 2020
FDA-ARGOS is a database with public quality-controlled reference genomes for diagnostic use and regulatory science. Sichtig H, et al. Nat Commun 2019 Jul 25
Genomic analyses of Burkholderia cenocepacia reveal multiple species with differential host-adaptation to plants and humans. Wallner A, et al. BMC Genomics 2019 Nov 4
Genomics Reveals a Unique Clone of Burkholderia cenocepacia Harboring an Actively Excising Novel Genomic Island. Patil PP, et al. Front Microbiol 2017
Draft Genome Sequence of Burkholderia cenocepacia Strain CEIB S5-2, a Methyl Parathion- and p-Nitrophenol-Degrading Bacterium, Isolated from Agricultural Soils in Morelos, Mexico. Martínez-Ocampo F, et al. Genome Announc 2016 Apr 28
Burkholderia cenocepacia Strain CEIB S5-1, a Rhizosphere-Inhabiting Bacterium with Potential in Bioremediation. Martínez-Ocampo F, et al. Genome Announc 2015 Mar 5
A Year of Infection in the Intensive Care Unit: Prospective Whole Genome Sequencing of Bacterial Clinical Isolates Reveals Cryptic Transmissions and Novel Microbiota. Roach DJ, et al. PLoS Genet 2015 Jul
Genome Sequence of Burkholderia cenocepacia H111, a Cystic Fibrosis Airway Isolate. Carlier A, et al. Genome Announc 2014 Apr 10
Whole-genome assemblies of 56 burkholderia species. Daligault HE, et al. Genome Announc 2014 Nov 20
Draft Genome Sequences of Burkholderia cenocepacia ET12 Lineage Strains K56-2 and BC7. Varga JJ, et al. Genome Announc 2013 Oct 17
The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients. Holden MT, et al. J Bacteriol 2009 Jan
A Burkholderia cenocepacia orphan LuxR homolog is involved in quorum-sensing regulation. Malott RJ, et al. J Bacteriol 2009 Apr
Identification of specific and universal virulence factors in Burkholderia cenocepacia strains by using multiple infection hosts. Uehlinger S, et al. Infect Immun 2009 Sep
Towards the proteome of Burkholderia cenocepacia H111: setting up a 2-DE reference map. Riedel K, et al. Proteomics 2006 Jan
Burkholderia cepacia complex isolates survive intracellularly without replication within acidic vacuoles of Acanthamoeba polyphaga. Lamothe J, et al. Cell Microbiol 2004 Dec
Identification of a novel virulence factor in Burkholderia cenocepacia H111 required for efficient slow killing of Caenorhabditis elegans. Huber B, et al. Infect Immun 2004 Dec
Analysis of the quorum-sensing regulon of the opportunistic pathogen Burkholderia cepacia H111 by proteomics. Riedel K, et al. Electrophoresis 2003 Feb
Killing of Caenorhabditis elegans by Burkholderia cepacia is controlled by the cep quorum-sensing system. Köthe M, et al. Cell Microbiol 2003 May
An epidemic Burkholderia cepacia complex strain identified in soil. LiPuma JJ, et al. Lancet 2002 Jun 8
Genetic analysis of functions involved in the late stages of biofilm development in Burkholderia cepacia H111. Huber B, et al. Mol Microbiol 2002 Oct

Representative (genome information for reference and representative genomes)

Reference genome:

Burkholderia cenocepacia ASM171889v1

Submitter: Northern Arizona University

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	1	NZ_CP013450.1	CP013450.1	3.59	67.0	3,264	12	60	4	3,356	16

Chr	2	NZ_CP013452.1	CP013452.1	3.07	67.4	2,698	3	6	-	2,742	35

Chr	3	NZ_CP013451.1	CP013451.1	1.12	67.6	956	3	2	-	972	11

Dendrogram (based on genomic BLAST)

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