Phaeodactylum tricornutum
Representative genome: Phaeodactylum tricornutum CCAP 1055/1 (assembly ASM15095v2)
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BLAST against Phaeodactylum tricornutum genome

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ID: 418
Organism ImagePhaeodactylum tricornutum

Microalgae being used as a model diatom species for genome analysis

Lineage: Eukaryota[2833]; Stramenopiles[78]; Bacillariophyta[7]; Bacillariophyceae[4]; Bacillariophycidae[4]; Naviculales[2]; Phaeodactylaceae[1]; Phaeodactylum[1]; Phaeodactylum tricornutum[1]
Phaeodactylum tricornutum is a diatom belonging to the class Bacillariophyceae. Diatoms are unicellular algae that secrete intricate skeleton made of silica. Diatoms play an important role in marine ecosystem, particularly in the biogeochemical cycling of minerals like silica, and for global carbon fixation. They can be found in both More...

Summary

Submitter: Diatom Consortium
Assembly level: Chromosome
Assembly: GCA_000150955.2 ASM15095v2 scaffolds: 88 contigs: 179 N50: 417,209 L50: 20
BioProjects: PRJNA33251, PRJNA13152
Whole Genome Shotgun (WGS): INSDC: ABQD00000000.1
Statistics: total length (Mb): 27.4507
 protein count: 10408
 GC%: 48.8432

Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein Gene Pseudogene
Chr1NC_011669.1CM000605.12.5448.41,0381,0381
Chr2NC_011670.1CM000606.11.548.6611611-
Chr3NC_011671.1CP001142.11.4648.6552552-
Chr4NC_011672.1CM000607.11.3648.7538538-
Chr5NC_011673.1CM000608.11.149.24294301
Chr6NC_011674.1CM000609.11.0449.2446445-
Chr7NC_011675.1CM000610.11.0348.2391389-
Chr8NC_011676.1CM000611.11.0149.0404401-
Chr9NC_011677.1CM000612.1149.1379379-
Chr10NC_011678.1CM000613.10.9849.2377377-
Chr11NC_011679.1CP001141.10.9548.4368367-
Chr12NC_011680.1CM000614.10.948.4352351-
Chr13NC_011681.1CM000615.10.8948.7357357-
Chr14NC_011682.1CM000616.10.8349.3317316-
Chr15NC_011683.1CM000617.10.8149.5322321-
Chr16NC_011684.1CM000618.10.7649.0292291-
Chr17NC_011685.1CM000619.10.749.12592601
Chr18NC_011686.1CM000620.10.749.0259259-
Chr19NC_011687.1CM000621.10.6949.4259258-
Chr20NC_011688.1CM000622.10.6849.12592601
Chr21NC_011689.1CM000623.10.6649.4254254-
Chr22NC_011690.1CM000624.10.5949.0237236-
Chr23NC_011691.1CM000625.10.5149.5192192-
Chr24NC_011692.1CM000626.10.5148.8158158-
Chr25NC_011693.1CM000627.10.549.5182182-
Chr26NC_011694.1CM000628.10.4449.7141141-
Chr27NC_011695.1CM000629.10.449.2148147-
Chr28NC_011696.1CM000630.10.3947.9167167-
Chr29NC_011697.1CM000631.10.3849.29696-
Chr30NC_011698.1CM000632.10.3249.4104104-
Chr31NC_011699.1CM000633.10.2648.57878-
Chr32NC_011700.1CM000634.10.1648.84444-
Chr33NC_011701.1CM000635.10.0947.32323-
Un-.-1.3148.03753762

Chromosomes

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