Clostridioides difficile
Reference genome: Clostridioides difficile 630
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BLAST against Clostridioides difficile genome, protein
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ID: 535
Clostridioides difficile

Causative agent of pseudomembranous colitis

Lineage: Bacteria[14319]; Firmicutes[2182]; Clostridia[807]; Clostridiales[699]; Peptostreptococcaceae[36]; Clostridioides[2]; Clostridioides difficile[1]
Clostridium. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. Characteristic of clostridia is the shape of their cells that resembles a drumstick More...

Summary

Sequence data: genome assemblies: 953; sequence reads: 8 (See  Genome Assembly and Annotation report)
Statistics: median total length (Mb): 4.18812
 median protein count: 3676
 median GC%: 28.6

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 Representative (genome information for reference and representative genomes)

    Reference genome: [see all organisms]

    • minus sign  Clostridioides difficile 630

      Submitter: Sanger Institute

      Human Pathogen

      Morphology: Gram:Positive, Shape:Bacilli, Motility:Yes

      Environment: Salinity:NonHalophilic, OxygenReq:Anaerobic, OptimumTemperature:37, TemperatureRange:Mesophilic, Habitat:Multiple

      Phenotype: Disease:Antibiotic-associated diarrhea and pseudomembraneous colitis

      Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
      Chr-NC_009089.1AM180355.14.2929.13,7563287643,97196
      PlsmpCD630NC_008226.1AM180356.10.00788127.911---11-

    Representative genome: [see all organisms]

    • minus sign  Clostridioides difficile CD630DERM

      Submitter: WTSI

      Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
      Chr1NZ_LN614756.1LN614756.14.2929.13,841358944,04475

Dendrogram (based on genomic BLAST)

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