Xenopus tropicalis (tropical clawed frog)
Representative genome: Xenopus tropicalis (assembly Xenopus_tropicalis_v9.1)
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BLAST against Xenopus tropicalis genome

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ID: 80
Organism ImageXenopus tropicalis (tropical clawed frog)

Western clawed frog (Xenopus (Silurana) tropicalis) is an important model organism for studies in cell and developmental biology.

Lineage: Eukaryota[3392]; Metazoa[1117]; Chordata[547]; Craniata[537]; Vertebrata[537]; Euteleostomi[528]; Amphibia[6]; Batrachia[6]; Anura[5]; Pipoidea[2]; Pipidae[2]; Xenopodinae[2]; Xenopus[2]; Silurana[1]; Xenopus tropicalis[1]
The Western clawed frog, Xenopus (Silurana) tropicalis, is native to Africa and is an important model organism for the study of developmental genetics and vertebrate biology. In contrast to the African clawed frog (Xenopus laevis) which has a tetraploid genome and was used in the early years of embryological research, the Western clawed More...

Summary

Submitter: DOE Joint Genome Institute
Assembly level: Chromosome
Assembly: GCA_000004195.3 Xenopus_tropicalis_v9.1 scaffolds: 6,822 contigs: 61,330 N50: 71,041 L50: 5,552
BioProjects: PRJNA205740, PRJNA12348
Whole Genome Shotgun (WGS): INSDC: AAMC00000000.3
Statistics: total length (Mb): 1440.4
 protein count: 39715
 GC%: 40.5404
NCBI Annotation Release:  103

Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
Chr1NC_030677.1CM004443.1194.8739.55,093-204492,87836
Chr2NC_030678.1CM004444.1170.239.84,327-2724222,72721
Chr3NC_030679.1CM004445.1137.2239.84,251-1,0273553,43925
Chr4NC_030680.1CM004446.1133.4740.03,965-1213712,36618
Chr5NC_030681.1CM004447.1146.4439.73,326-1243082,05040
Chr6NC_030682.1CM004448.1135.1439.92,836-982521,67118
Chr7NC_030683.1CM004449.1117.1840.23,2171282941,90734
Chr8NC_030684.1CM004450.1117.6240.23,896-3653972,61819
Chr9NC_030685.1CM004451.180.4441.02,486-122391,55934
Chr10NC_030686.1CM004452.139.9542.81,632-1631021,0486
MTNC_006839.1AY789013.10.0242.513222-13-
Un-.-167.8744.54,67312916264,22090

Chromosomes

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