Thalassiosira pseudonana
Representative genome: Thalassiosira pseudonana CCMP1335 (assembly ASM14940v2)
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BLAST against Thalassiosira pseudonana genome

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ID: 54
Organism ImageThalassiosira pseudonana

Diatoms are photosynthetic unicellular algae and this species has served as a model for diatom physiology studies

Lineage: Eukaryota[2324]; Stramenopiles[68]; Bacillariophyta[5]; Coscinodiscophyceae[2]; Thalassiosirophycidae[2]; Thalassiosirales[2]; Thalassiosiraceae[2]; Thalassiosira[2]; Thalassiosira pseudonana[1]
Thalassiosira pseudonana is an unicellular algae, a diatom. Diatoms are found in almost all aquatic enviroments in the world. They have been well studied in both their natural habitat and in laboratory settings. Diatoms grow an outer silica shell, called a frustule, that is unique to each species. The silica shell can be preserved, and fossil More...

Summary

Submitter: Diatom Consortium
Assembly level: Chromosome
Assembly: GCA_000149405.2 ASM14940v2 scaffolds: 64 contigs: 115 N50: 1,267,198 L50: 8
BioProjects: PRJNA34119, PRJNA191
Whole Genome Shotgun (WGS): RefSeq: NZ_AAFD00000000.2; INSDC: AAFD00000000.2
Statistics: total length (Mb): 32.4374
 protein count: 11673
 GC%: 46.905

Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein Gene Pseudogene
NucChr1NC_012064.1CM000638.13.0446.91,1771,18710
NucChr2NC_012065.1CM000639.12.7146.91,0211,0287
NucChr3NC_012066.1CM000640.12.4446.898699611
NucChr4NC_012067.1CM000641.12.447.09139196
NucChr5NC_012068.1CM000642.12.3146.98728764
NucChr6NC_012069.1CM000643.12.0746.97737818
NucChr7NC_012070.1CP001160.11.9947.071072010
NucChr8NC_012071.1CM000644.11.2746.84834863
NucChr9NC_012072.1CM000645.11.1947.03933941
NucChr10NC_012073.1CM000646.11.1147.03863871
NucChr12NC_012075.1CM000647.11.1347.13493545
NucChr13NC_012076.1CM000648.11.0547.03763782
NucChr14NC_012077.1CM000649.10.99864347.13513521
NucChr15NC_012078.1CM000650.10.93126847.03033085
NucChr17NC_012080.1CM000651.10.65992447.0218218-
NucChr18NC_012081.1CP001159.10.82705346.83033041
NucChr20NC_012083.1CM000652.10.80023447.02562593
NucChr22NC_012085.1CM000653.11.0647.23243306
NucChr23NC_012086.1CM000654.10.45495447.11521542
NucChr24NC_012087.1CM000655.10.29734946.58686-
Un-.-3.746.61,2411,25413

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