Octodon degus (degu)
Representative genome: Octodon degus (assembly OctDeg1.0)
Download sequences in FASTA format for genome, transcript, protein
Download genome annotation in GFF, GenBank or tabular format
BLAST against Octodon degus genome

Display Settings:

Format

Send to:

Choose Destination

Links from Assembly

ID: 11848
Organism ImageOctodon degus (degu)

Common degu or brush-tailed rat overview

Lineage: Eukaryota[2519]; Metazoa[835]; Chordata[358]; Craniata[350]; Vertebrata[350]; Euteleostomi[344]; Mammalia[148]; Eutheria[143]; Euarchontoglires[65]; Glires[34]; Rodentia[32]; Hystricomorpha[6]; Octodontidae[1]; Octodon[1]; Octodon degus[1]
The common degu (Octodon degus) is a caviomorph rodent related to chinchillas and guinea pigs. This small rodent is native to Andean slopes of west central Chile. Degus are often used as research subjects in the study of circadian rhythms and diabetes.

Summary

Submitter: Broad Institute
Assembly level: Scaffold
Assembly: GCA_000260255.1 OctDeg1.0 scaffolds: 7,135 contigs: 259,905 N50: 19,847 L50: 36,018
BioProjects: PRJNA193441, PRJNA74595
Whole Genome Shotgun (WGS): INSDC: AJSA00000000.1
Statistics: total length (Mb): 2995.89
 protein count: 27336
 GC%: 42.5
NCBI Annotation Release:  101

Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
MTNC_020661.1HM544134.10.0237.413222-13-
Un-.-2,995.8742.527,323-30380734,02613,076

Chromosomes

Click on chromosome name to open Genome Data Viewer

Supplemental Content

NCBI Resources

Tools

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center