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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones

FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
9 RP11-1111J1 C 9p24(FHCRC)
chr9 3Mb     AQ832383.1 SP6,
AQ731806.1 T7
9 RP11-122A20 C 9p24(FHCRC)
chr9 2Mb   SHGC-12535 AQ342996.1 SP6  
9 RP11-125B21 S 9p24.1~24.3(SC)
chr9 2Mb AL353667.10   AQ348385.1 T7,
AQ348383.1 SP6
9 RP11-125K10 CS 9p24(FHCRC)
chr9 4Mb AL158147.17 SHGC-1334 AQ348273.1 T7,
AQ348271.1 SP6
9 RP11-12N24 C 9p24(FHCRC)
chr9 5Mb   SHGC-34067 B75942.1 SP6  
9 RP11-280I16 C 9p24(FHCRC)
chr9 4Mb AL162587.20 SHGC-35927, SHGC-12918*u AQ504357.1 SP6  
9 RP11-28N6 C 9p24(FHCRC)
chr9 1Mb AC021924.3*u SHGC-1302 B84922.1 T7,
AQ003448.1 SP6
9 RP11-31F19 S 9p24.1~24.3(SC)
chr9 0Mb AL392089.7   AQ016466.1 SP6  
9 RP11-48M17 CS 9p24(FHCRC)
chr9 2Mb AL138755.13 AA481026 AQ201892.1 ,
9 RP11-62H18 C 9p24(FHCRC)
      SHGC-12918*u AQ195277.1*u  
9 RP11-79M14 C 9p24(FHCRC)
chr9 2Mb     AQ581519.1 SP6,
AQ283254.1 T7,
AQ629695.1 T7,
AQ283251.1*u SP6
9 RP11-88P16 CR 9p24(FHCRC)
chr9 1Mb     AZ516926.1 T7,
AQ281633.1 T7,
AQ281631.1 SP6
9 RP11-91N2 S 9p24.1~24.3(SC)
chr9 2Mb AL353614.9   AQ285338.1 SP6,
AQ285349.1 T7
9 RP11-10G22 S 9p23~24.3(SC)
chr9 1Mb AL136978.8   B72839.1 T7,
B72838.1 SP6
9 RP11-12D24 S 9p23~24.3(SC)
chr9 5Mb AL135786.17   B75747.1 SP6,
B75748.1 T7
9 RP11-140C18 S 9p23~24.3(SC)
chr9 5Mb AL133547.16   AQ386189.1 T7  
9 RP11-143M15 S 9p23~24.3(SC)
chr10 49Mb AL136365.9*d   AQ388931.1 SP6,
AQ388933.1 T7
9 RP11-143M15 S 9p23~24.3(SC)
chr9 0Mb AL136365.9   AQ388931.1*d SP6,
AQ388933.1*d T7
9 RP11-162C17 C 9p23~24(FHCRC)
chr9 4Mb     AQ378112.1 SP6  
9 RP11-175E13 S 9p23~24.3(SC)
chr9 8Mb AL137125.7   AZ521145.1 SP6,
AZ521147.1*u T7
9 RP11-207C16 S 9p23~24.3(SC)
chr9 5Mb AL136980.5   AQ415081.1 T7,
AQ415079.1 SP6
9 RP11-29B9 S 9p23~24.3(SC)
chr9 7Mb AL135923.15   B84973.1 T7  
9 RP11-31M2 RS 9p23~24.3(SC)
chr9 4Mb AL133283.9   AQ045931.1 ,
9 RP11-352G21 S 9p23~24.3(SC)
chr9 7Mb AL135788.11   AQ529904.1 SP6,
AQ529907.1 T7
9 RP11-635N21 S 9p23~24.3(SC)
chr9 5Mb AL354744.13   AQ404440.1*u SP6,
AQ521834.1*u T7
9 RP11-6H18 S 9p23~24.3(SC)
chr9 9Mb AL137851.12   B49427.1 T7  
9 RP11-6J24 CS 9p23(FHCRC)
chr9 4Mb AL136231.12 SHGC-35927 B49464.1 SP6  
9 RP11-79K3 CRS 9p23(FHCRC)
chr9 7Mb AL157703.14   AQ283742.1 T7,
AZ519076.1 SP6,
AQ317572.1 SP6
9 RP11-19G1 RS 9p23~24.1(SC)
chr9 9Mb AL390723.21   CL423039.1 T7,
B81956.1 T7,
CL423034.1 SP6
9 RP11-118F23 S 9p22.3~24.1(SC)
chr9 5Mb     AQ348418.1 T7,
AQ348417.1 SP6
9 RP11-413D24 S 9p22.3~24.1(SC)
chr9 13Mb AL158157.8   AQ550708.1*u SP6  
9 RP11-115I23 C 9p23(FHCRC)
chr9 13Mb AC009919.3*u SHGC-32204 AQ343835.1 T7,
AQ343832.1 SP6
9 RP11-117J18 C 9p23(FHCRC)
chr9 12Mb   SHGC-33182 AQ350486.1 SP6  
9 RP11-165O14 C 9p23(FHCRC)
chr9 5Mb AL353606.12 SHGC-36689 AQ382178.1 T7,
AQ382175.1 SP6
9 RP11-26H17 C 9p23(FHCRC)
chr9 13Mb AC016103.2*d SHGC-3971 B86877.1*d T7,
B88744.1*d SP6
9 RP11-26H17 C 9p23(FHCRC)
chr14 55Mb AC016103.2 SHGC-3971*d B86877.1 T7,
B88744.1 SP6
9 RP11-32D4 C 9p23(FHCRC)
chr9 11Mb AL592227.4 SHGC-9431 AQ044882.1 ,
9 RP11-472F14 C 9p23(FHCRC)
chr9 6Mb AL353718.10   AQ630257.1 SP6,
AQ630259.1 T7
9 RP11-50C21 C 9p23(FHCRC)
chr9 10Mb AL356054.25 SHGC-18065 AQ116362.1 ,
9 RP11-58B8 C 9p23(FHCRC)
chr9 11Mb AL513332.9 SHGC-13048 AQ201220.1 ,
9 RP11-79B9 C 9p23(FHCRC)
chr9 14Mb     AQ284020.1 T7,
AQ284019.1 SP6
9 RP11-89C16 C 9p23(FHCRC)
chr9 10Mb     AQ282677.1 SP6,
AQ282680.1 T7
9 RP11-89H6 C 9p23(FHCRC)
chr9 12Mb     AQ285880.1 T7,
AQ285877.1*u SP6
9 RP11-91E3 C 9p23(FHCRC)
chr9 9Mb     AQ286377.1 T7,
AQ286376.1 SP6
9 RP11-109M15 C 9p22~23(FHCRC)
chr9 16Mb AL513424.3 AFM051XD6 AQ320358.1 T7  
9 RP11-120J1 C 9p22~23(FHCRC)
chr9 14Mb AL137017.9 AFM282ZH9, SHGC-34905*u, SHGC-18228*u AQ351228.1 T7,
AQ351225.1 SP6
9 RP11-382H24 S 9p22.1~23(SC)
chr9 12Mb AL161449.7   AQ533175.1 SP6  
9 RP11-87N24 RS 9p22.1~23(SC)
chr9 10Mb AL135790.7 SHGC-18065 AQ285710.1 T7  
9 RP11-346N23 RS 9p21.3~23(SC)
chr9 22Mb AL356116.6   AQ531616.1 SP6,
AQ531618.1 T7
9 RP11-476H4 S 9p21.3~23(SC)
chr9 22Mb     AQ634591.1 SP6  
9 RP11-490C5 RS 9p21.3~23(SC)
chr9 15Mb AL390246.17   AQ634942.1 T7,
AQ634941.1 SP6
9 RP11-608O6 S 9p21.3~23(SC)
        AQ359446.1*u T7  
9 RP11-163F8 CRS 9p21.2~23(SC)
chr9 17Mb AL133214.12 AFM067XD3 AQ380761.1 SP6,
AQ380771.1 T7
9 RP11-54D21 R 9p22.3c~23a(NCI)
chr9 14Mb AL449443.10   AQ081562.1 ,
CL423065.1 SP6,
9 CTD-2104C3 R 9p22(UCSF)
chr9 5Mb     AQ724247.1 T7  
9 RP11-252O2 RS 9p22.1~22.3(SC)
chr9 19Mb AL133281.12 SHGC-730 AQ478174.1 T7,
AQ478171.1 SP6
9 RP11-89J9 C 9p22(FHCRC)
chr9 17Mb     AQ284755.1 SP6,
AQ284756.1 T7
9 RP11-89C6 C 9p21.3~22(FHCRC)
chr9 19Mb     AQ281703.1 T7,
AQ281702.1 SP6
9 RP11-113D19 S 9p21.2~22.3(SC)
chr9 20Mb AL390882.12   AQ341902.1 T7,
AQ341899.1 SP6
9 RP11-344A7 RS 9p21.2~22.3(SC)
chr9 21Mb AL137022.8   AQ539553.1 SP6,
AQ539556.1 T7
9 RP11-11J1 S 9p21.1~22.3(SC)
chr9 22Mb AC026274.5,
  B74889.1*u SP6  
9 RP11-61D22 C 9p21~22(FHCRC)
chr9 19Mb   SHGC-730 AQ196323.1 ,
9 RP11-482I10 S 9p21.1~22.2(SC)
chr9 24Mb AL353811.12   AZ518632.1 T7,
AQ630694.1*u T7
9 RP11-80J12 C 9p21.3(FHCRC)
chr9 25Mb     AQ284122.1 T7,
AQ317763.1 SP6
9 CTD-2170E19 C 9p21(FHCRC)
chr9 27Mb     B92526.1  
9 RP11-159L16 RS 9p21.1~21.3(SC)
chr9 29Mb AL138893.5   AQ374033.1 T7,
AQ374030.1 SP6
9 RP11-18A21 C 9p21(FHCRC)
chr9 30Mb AL359032.13 SHGC-9153 B88073.1*u T7  
9 RP11-235F7 C 9p21(FHCRC)
chr9 27Mb   SHGC-36542 AQ481673.1 SP6  
9 RP11-2G13 S 9p21.1~21.3(SC)
chr9 30Mb AL159995.8   B48525.1 SP6,
B48526.1 T7
9 RP11-30O14 S 9p21.1~21.3(SC)
chr9 28Mb AL158072.9   B87919.1 SP6  
9 RP11-33O15 C 9p21(FHCRC)
chr9 22Mb   SHGC-8727 AQ046288.1  
9 RP11-378I6 C 9p21(FHCRC)
chr9 19Mb AL591222.2   AQ552289.1 T7,
AQ552288.1 SP6
9 RP11-380P16 C 9p21(FHCRC)
chr9 21Mb AL162420.13   AQ535626.1*u T7  
9 RP11-55P9 CR 9p21(FHCRC)
chr9 25Mb AL353730.13 SHGC-1979 AQ081836.1 ,
9 RP11-57P14 RS 9p21.1~21.3(SC)
chr9 27Mb AL133411.9   AQ195735.1 ,
9 RP11-5P15 S 9p21.1~21.3(SC)
chr9 26Mb AL442639.2   B49328.1 T7  
9 RP11-79K11 C 9p21(FHCRC)
chr9 29Mb     AZ519079.1 SP6,
AQ317576.1 SP6,
AQ283747.1 T7
9 RP11-81B11 C 9p21(FHCRC)
chr9 18Mb     AZ521502.1 T7,
AQ280963.1 T7,
AQ280962.1 SP6
9 RP11-81B19 C 9p21(FHCRC)
chr9 27Mb     AQ280988.1 SP6,
AQ280991.1 T7
9 RP11-89J14 9p21(FHCRC)
chr9 25Mb     AQ286554.1 T7,
AQ286553.1*u SP6
9 RP11-29M23 S 9p13.3~21.3(SC)
chr9 29Mb AL392110.12   B87624.1 SP6  
9 RP11-118C13 C 9p13~21(FHCRC)
chr9 32Mb   SHGC-34030 AQ351129.1 T7  
9 RP11-141J7 C 9p13~21(FHCRC)
chr9 32Mb   SHGC-10826 AQ387305.1 T7,
AQ387302.1 SP6
9 RP11-182N22 C 9p13~21(FHCRC)
chr9 35Mb AL353795.13   AQ415988.1 SP6  
9 RP11-326F20 C 9p13~21(FHCRC)
chr9 33Mb AL161445.10   AQ538767.1 SP6,
AQ548728.1*u T7
9 RP11-61G7 C 9p13~21(FHCRC)
chr9 35Mb   SHGC-12605 AQ237568.1 SP6  
9 RP11-79E21 C 9p13~21(FHCRC)
chr9 32Mb AL513167.18   AQ282533.1 T7,
AZ520722.1 SP6,
AQ282531.1 SP6
9 RP11-630H9 S 9p13.3~21.2(SC)
chr9 30Mb AL354704.17   AQ435907.1*u SP6  
9 RP11-52I10 C 9p21.1(FHCRC)
chr9 31Mb   SHGC-7397 AQ058841.1 ,
9 RP11-70F16 C 9p21.1(FHCRC)
chr9 31Mb   SHGC-6958 AQ237780.1 T7,
AQ237778.1*u SP6
9 RP11-54K16 S 9p13.3~21.1(SC)
chr9 32Mb AL162590.15   AQ083227.1 ,
9 RP11-462B18 RS 9p13.1~21.1(SC)
chr9 32Mb AL157884.9   AQ634208.1 T7  
9 RP11-112J3 RS 9p13.1~13.3(SC)
chr9 35Mb AL133410.32 SHGC-12605 AQ313109.1 SP6,
AQ343296.1*u T7
9 RP11-156G14 S 9p13.1~13.3(SC)
chr9 35Mb AL133476.17   AQ388416.1*u SP6  
9 RP11-165H19 C 9p13(FHCRC)
chr9 34Mb   SHGC-35540, SHGC-37670 AQ382511.1 T7,
AQ415409.1*u SP6
9 RP11-195F19 C 9p13(FHCRC)
chr9 34Mb AL162231.20   AQ417289.1 T7  
9 RP11-39I6 C 9p13(FHCRC)
chr9 36Mb   SHGC-32868 AQ030071.1 T7  
9 RP11-8N6 C 9p13(FHCRC)
chr9 36Mb AL442063.8 AA903137 B71488.1 SP6,
B71489.1 T7
9 RP11-12P15 S 9p12~13.3(SC)
chr9 36Mb AL158148.8   B75971.1 T7,
B75970.1 SP6
9 RP11-144L7 C 9p12~13(FHCRC)
chr9 38Mb   SHGC-6407 AQ389612.1 T7  
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
9 RP11-3J10 CRS 9p12~13.3(SC)
chr9 37Mb AL138752.5 AA427595 B63794.1 T7,
B48799.1 T7,
B63793.1 SP6
9 RP11-64M21 S 9p12~13.3(SC)
chr9 27Mb AL390250.5   AQ239839.1 SP6  
9 RP11-61I3 CS 9p11.2~13.1(SC)
chr9 37Mb AL139414.5 SHGC-14824 AQ237613.1 SP6  
9 RP11-113O24 CS 9p11~13.3(SC)
chr9 38Mb AL135785.10 R93551 AQ372537.1 SP6,
AQ341800.1 T7
9 RP11-141J10 C 9q13(FHCRC)
chr9 72Mb AL159990.12   AQ388264.1 SP6,
AQ388266.1 T7
9 RP11-19O14 C 9q13(FHCRC)
chr9 72Mb AC013657.3*u SHGC-20546 B83028.1 T7,
B89558.1 SP6
9 RP11-44J18 C 9q13(FHCRC)
chr9 71Mb AL606666.6 SHGC-12216 AQ203031.1 ,
9 RP11-89K20 C 9q13(FHCRC)
chr9 72Mb     AQ282954.1 T7,
AQ282953.1 SP6
9 RP11-151D14 CS 9q13(FHCRC)
chr9 74Mb AL591031.3 SHGC-2479 AQ379180.1 SP6,
AQ379200.1 T7
9 RP11-158I5 S 9q13~21.2(SC)
chr9 78Mb     AQ389892.1 SP6,
AQ389893.1 T7
9 RP11-17G17 S 9q13~21.2(SC)
chr9 77Mb     B82687.1 T7  
9 RP11-652B19 S 9q13~21.2(SC)
chr9 77Mb AL353607.20   AQ438001.1 T7  
9 RP11-725M24 S 9q13~21.2(SC)
chr9 76Mb AL355152.8   AQ616365.1 T7  
9 RP11-133M9 S 9q13~21.33(SC)
chr9 76Mb AL137018.9   AZ521451.1 SP6  
9 RP11-16N10 CRS 9q13(FHCRC)
chr9 70Mb AL358113.21 SHGC-34170 B83639.1 T7,
B82556.1 SP6
9 RP11-71A24 C 9q13~21(FHCRC)
chr9 74Mb AL359997.8   AQ239848.1 SP6  
9 RP11-136M18 C 9q21.1(FHCRC)
chr9 79Mb   SHGC-32427 AQ346132.1 T7,
AQ383303.1 SP6
9 RP11-14J9 C 9q21.1(FHCRC)
chr9 76Mb   SHGC-37393, SHGC-37393*u B81680.1 SP6,
B81681.1*u T7
9 RP11-468J21 C 9q21.1(FHCRC)
chr9 77Mb AL589653.9 RH48203 BH367018.1 T7,
AQ632492.1 SP6,
BH152865.1 SP6,
AQ632493.1*u T7
9 RP11-8L13 CR 9q21.1(FHCRC)
chr9 73Mb AC016411.3,
SHGC-9322 B72401.1 SP6,
B72402.1 T7
9 RP11-96B7 C 9q21.1(FHCRC)
chr9 78Mb   SHGC-35114*u AQ313644.1 T7,
AQ313642.1 SP6
9 RP11-203L2 RS 9q21.11~21.2(SC)
chr9 70Mb AL354794.16   CL423101.1 SP6,
CL423104.1 T7,
AQ420119.1 T7
9 RP11-696B6 S 9q21.11~21.31(SC)
chr9 71Mb     AQ613664.1 SP6  
9 RP11-111E2 S 9q21.11~21.33(SC)
chr9 79Mb AL359849.12   AQ322759.1 SP6  
9 RP11-117O7 S 9q21.11~21.33(SC)
chr9 82Mb AL160267.17   AQ348506.1 T7,
AQ348504.1*u SP6
9 RP11-208G24 C 9q21(FHCRC)
chr9 88Mb AL158149.14   AQ418717.1*u T7  
9 RP11-20B20 C 9q21(FHCRC)
chr9 86Mb   SHGC-12933 B85586.1 T7,
AQ003315.1*u SP6
9 RP11-23D11 C 9q21(FHCRC)
chr9 84Mb   SHGC-13667*u AQ013730.1 ,
9 RP11-346I8 C 9q21(FHCRC)
chr9 85Mb AC012279.5,
  AQ542368.1 T7,
AQ542366.1 SP6
9 RP11-54O21 C 9q21(FHCRC)
chr9 74Mb   SHGC-12349 AQ082668.1  
9 RP11-56C1 C 9q21(FHCRC)
      SHGC-30336*u AQ115939.1*u  
9 RP11-57N18 C 9q21(FHCRC)
chr9 77Mb   SHGC-1994 AQ115571.1 ,
9 RP11-63P12 S 9q21.11~21.33(SC)
chr9 74Mb AL135924.11   AQ238571.1 SP6  
9 RP11-74F15 C 9q21(FHCRC)
chr9 85Mb   SHGC-17272 AQ266766.1 SP6,
AQ238947.1 T7
9 RP11-79G7 C 9q21(FHCRC)
chr9 81Mb   SHGC-20552 AQ283447.1 T7,
AZ520731.1 SP6,
AQ283445.1 SP6
9 RP11-79I21 C 9q21(FHCRC)
chr9 88Mb     AQ283732.1 T7,
AZ519070.1 SP6,
AQ317569.1 SP6
9 RP11-81L3 C 9q21(FHCRC)
chr9 79Mb     AQ281825.1 SP6,
AQ281827.1 T7
9 RP11-159H20 S 9q21.12~21.32(SC)
chr9 78Mb AL353637.21   AQ373951.1 T7  
9 RP11-323A7 S 9q21.12~21.32(SC)
chr9 77Mb AL158073.10   AQ537771.1 SP6  
9 RP11-360J12 S 9q21.12~21.32(SC)
chr9 77Mb AL157883.15   AZ519646.1 SP6,
AQ528387.1*u T7
9 RP11-698K16 R 9q21.13b(NCI)
chr9 75Mb AC021177.6   CL423138.1 T7,
CL423135.1 SP6
9 RP11-31D18 CR 9q21.2~21.3(FHCRC)
chr9 81Mb AC023067.3 SHGC-20552 AQ081493.1 ,
CL423169.1 SP6,
CL423170.1 T7,
9 RP11-174B4 S 9q21.2~22.1(SC)
chr9 76Mb AL354795.17   AQ417564.1 SP6,
AQ417567.1 T7
9 RP11-669O1 S 9q21.2~22.1(SC)
chr9 79Mb     AQ430381.1 SP6  
9 RP11-142P12 C 9q21.3(FHCRC)
chr9 85Mb AL353641.9 SHGC-90 AQ388135.1 SP6,
AQ388138.1 T7
9 RP11-31N23 C 9q21.3(FHCRC)
chr9 91Mb   SHGC-1993 AQ045997.1*u  
9 RP11-59M22 S 9q21.31~21.33(SC)
chr9 86Mb AL157886.13   AQ202266.1 ,
9 RP11-79D13 C 9q21.3(FHCRC)
chr9 80Mb     AQ284091.1 T7,
AQ284088.1 SP6
9 RP11-79J13 C 9q21.3(FHCRC)
chr9 83Mb     AQ284288.1 T7,
AQ284287.1 SP6
9 RP11-80F16 C 9q21.3(FHCRC)
chr9 84Mb     AZ521456.1 T7,
AQ284021.1 T7,
AQ284016.1 SP6
9 RP11-80H20 C 9q21.3(FHCRC)
chr9 85Mb     AQ284098.1 T7,
AQ284095.1 SP6
9 RP11-8D10 C 9q21.3(FHCRC)
chr9 84Mb   SHGC-18071 B72303.1 SP6  
9 RP11-91M2 C 9q21.3(FHCRC)
chr9 82Mb     AQ282679.1 T7,
AQ282676.1 SP6
9 RP11-158D2 S 9q21.31~22.1(SC)
chr9 85Mb AL390838.26   AQ373690.1 T7  
9 RP11-22C13 CRS 9q21.3(FHCRC)
chr9 84Mb AL133391.5 SHGC-1978 B86137.1 SP6,
AQ009057.1 T7,
B86138.1 T7
9 RP11-65C15 CR 9q21.3~22.1(FHCRC)
chr9 87Mb AL161453.11 SHGC-5269 AQ237176.1 SP6,
AQ237178.1 T7
9 RP11-91M3 C 9q21.3~22.1(FHCRC)
chr9 87Mb     AQ281579.1 T7,
AQ281576.1 SP6
9 RP11-202I11 S 9q21.32~22.2(SC)
chr9 87Mb AL157882.5   AQ413860.1 SP6,
AQ413864.1*u T7
9 RP11-350G13 RS 9q21.32~22.32(SC)
chr9 90Mb AL158076.20   AZ516206.1 T7  
9 RP11-19J3 S 9q21.33~22.31(SC)
chr9 94Mb AL157827.17   B88373.1 SP6,
B91698.1 T7
9 RP11-65B23 CRS 9q21.33c(NCI)
chr9 89Mb AL160279.21 SHGC-12637 AQ193954.1 ,
AQ237132.1 SP6
9 RP11-88J16 C 9q22.1~22.2(FHCRC)
chr9 90Mb   SHGC-30777 AQ281001.1 T7,
AZ516285.1 T7,
AQ280998.1 SP6
9 RP11-100G15 C 9q22(FHCRC)
chr9 93Mb AL354751.7   AQ320472.1 SP6,
AQ320485.1 T7
9 RP11-165J3 C 9q22(FHCRC)
chr9 95Mb AL583839.12   AQ415433.1 SP6,
AQ382525.1 T7
9 RP11-30L4 S 9q22.1~22.33(SC)
chr9 95Mb AL353629.22   B85211.1 T7,
B85210.1 SP6
9 RP11-41K9 C 9q22(FHCRC)
chr9 88Mb   SHGC-20556 AQ029164.1 SP6  
9 RP11-435O5 S 9q22.1~22.33(SC)
chr9 97Mb AL161729.27   AQ585646.1 T7  
9 RP11-44O3 C 9q22(FHCRC)
chr9 93Mb   SHGC-5272 AQ196160.1  
9 RP11-62C3 S 9q22.1~22.33(SC)
chr9 93Mb AL136097.10   AQ198514.1 ,
9 RP11-77D6 S 9q22.1~22.33(SC)
chr9 94Mb AL137848.5 SHGC-14663, SHGC-35056 AQ284621.1 SP6  
9 RP11-79A20 C 9q22(FHCRC)
chr9 98Mb     AQ282413.1 T7,
AQ628785.1 T7,
AZ519141.1 SP6,
AQ580460.1 SP6,
AQ282404.1 SP6
9 RP11-80I15 CR 9q22(FHCRC)
chr9 96Mb AL354893.14   AQ281229.1 SP6,
AQ281231.1 T7
9 RP11-80J10 C 9q22(FHCRC)
chr9 92Mb     AQ317762.1 SP6,
AQ284119.1 T7
9 RP11-89K14 C 9q22(FHCRC)
chr9 90Mb BX000356.6 AA397813 AQ282947.1 SP6,
AQ282948.1 T7
9 RP11-89L5 C 9q22(FHCRC)
chr9 96Mb     AQ284801.1 SP6,
AZ517797.1 T7
9 RP11-956N15 C 9q22(FHCRC)
chr9 92Mb AC021581.10   AQ724162.1 SP6  
9 RP11-95D9 C 9q22(FHCRC)
chr9 94Mb   SHGC-14663, SHGC-35056 AQ314822.1 SP6  
9 RP11-95E22 S 9q22.1~31.1(SC)
chr9 96Mb AL160055.15   AQ313816.1 T7  
9 RP11-20D6 C 9q22~31(FHCRC)
chr9 101Mb AC022190.3*d,
  AQ008761.1 T7,
B83802.1 T7,
AQ003316.1*u SP6
9 RP11-20D6 C 9q22~31(FHCRC)
chr3 162Mb AC022190.3,
  B83802.1*d T7,
AQ008761.1*d T7,
AQ003316.1*u SP6
9 RP11-91D7 C 9q22~31(FHCRC)
chr9 100Mb   SHGC-34660 AQ283281.1 T7,
AQ283279.1 SP6
9 RP11-105E2 C 9q22.2(FHCRC)
chr9 90Mb   SHGC-1990 AQ347423.1 T7,
AQ317343.1 SP6
9 RP11-95G21 C 9q22.2(FHCRC)
chr9 92Mb   SHGC-20559 AQ312625.1 SP6,
AQ312628.1 T7
9 RP11-9I18 C 9q22.2(FHCRC)
chr9 92Mb   SHGC-31212 B72575.1 T7  
9 RP11-2B6 RS 9q22.2~31.1(SC)
chr9 95Mb AC087784.3,
  AQ283461.1 SP6,
B47731.1 T7
9 RP11-54O15 CS 9q22.2~31.1(SC)
chr9 96Mb AL353768.28 SHGC-32587 AQ082663.1 ,
9 RP11-435D17 R 9q22.2b~22.31a(NCI)
chr9 93Mb AL359391.5   AQ583780.1 SP6,
AQ553645.1 T7
9 RP11-34J23 C 9q22.3(FHCRC)
chr9 97Mb   SHGC-8725 AQ045016.1 ,
9 RP11-39J22 C 9q22.3(FHCRC)
chr9 109Mb   SHGC-6061 AQ029459.1*u T7  
9 RP11-106N7 C 9q22.3~31(FHCRC)
chr9 99Mb   SHGC-32963 AQ323132.1 SP6,
AQ323133.1 T7
9 RP11-20E13 C 9q22.3~31(FHCRC)
chr9 100Mb AC016274.3*u SHGC-30916 AQ008057.1 SP6,
B88646.1 SP6,
B85620.1*u T7
9 RP11-23B15 CR 9q22.3~31(FHCRC)
chr9 99Mb AL499604.9 SHGC-33415 AQ013713.1 ,
AQ013712.1 ,
B86408.1*u SP6
9 RP11-30N20 C 9q22.3~31(FHCRC)
chr9 101Mb   SHGC-32098*u B87912.1 T7,
B87911.1 SP6
9 RP11-69F21 C 9q22.3~31(FHCRC)
chr9 100Mb   SHGC-1985 AQ269078.1 SP6  
9 RP11-13B9 S 9q22.32~31.3(SC)
chr9 100Mb AL137067.7 SHGC-30916 B75088.1 T7,
B75087.1 SP6
9 RP11-467B11 S 9q22.32~31.3(SC)
chr9 101Mb AL356798.18   AQ629733.1 T7,
AQ629730.1*u SP6
9 RP11-54K22 S 9q22.32~31.3(SC)
chr9 103Mb AL133413.5   AQ083233.1 ,
9 RP11-30L7 RS 9q22.33~31.3(SC)
chr9 101Mb AC073459.3,
SHGC-31098 B85216.1*u T7  
9 RP11-338N12 S 9q22.33~31.3(SC)
chr9 104Mb AL365396.10   AQ539572.1 T7,
AQ539569.1 SP6
9 RP11-92C4 S 9q22.33~31.3(SC)
chr9 100Mb AL136084.11   AQ320660.1 T7,
AQ320659.1 SP6
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
9 RP11-235C23 S 9q31.1~31.3(SC)
chr9 107Mb AL158070.11   AQ485940.1*u SP6  
9 RP11-32M4 C 9q31(FHCRC)
chr9 109Mb   SHGC-14345 AQ047293.1  
9 RP11-4B2 C 9q31(FHCRC)
chr9 101Mb   SHGC-31098 B48002.1 SP6  
9 RP11-52E12 C 9q31(FHCRC)
chr9 101Mb   SHGC-8789 AQ056951.1 ,
9 RP11-5K11 C 9q31(FHCRC)
chr9 102Mb   SHGC-34139 B63951.1 SP6,
B63952.1 T7,
B49257.1 T7
9 RP11-60I3 S 9q31.1~31.3(SC)
chr9 101Mb AL358937.16 SHGC-32098*u AQ201054.1 ,
9 RP11-80H12 CR 9q31(FHCRC)
chr9 102Mb AL357935.14   AQ284076.1 T7,
AQ284074.1 SP6
9 RP11-80N14 C 9q31(FHCRC)
chr9 105Mb     AQ317838.1 SP6,
AZ521480.1 T7,
AQ284191.1 T7
9 RP11-91D17 C 9q31(FHCRC)
chr12 9Mb     AZ518770.1 T7,
AQ283298.1 T7
9 RP11-91L19 C 9q31(FHCRC)
chr9 104Mb     AQ284171.1 T7,
AQ284170.1 SP6
9 RP11-91N11 C 9q31(FHCRC)
chr9 110Mb AC141313.1   AQ284205.1 SP6,
AQ284208.1 T7
9 RP11-91P11 9q31(FHCRC)
        AQ284271.1*u T7  
9 RP11-104M22 RS 9q31.1~32(SC)
chr9 112Mb AL157881.14   AQ312968.1 T7,
AQ312967.1 SP6
9 RP11-202A15 RS 9q31.1~32(SC)
chr9 104Mb AL137021.15   AQ413699.1 SP6,
AQ413702.1*u T7
9 RP11-81P13 C 9q31~32(FHCRC)
chr9 112Mb   SHGC-5895 AQ282049.1 SP6,
AZ516079.1 T7,
AQ282056.1 T7
9 RP11-115J22 CS 9q31.3~33.2(SC)
chr9 110Mb AL354797.16 AA621315 AQ347952.1 T7,
AQ347949.1 SP6
9 RP11-217O12 RS 9q31.1d(NCI)
chr9 106Mb AL512646.11   CL423211.1 SP6,
CL423212.1 T7
9 RP11-143P10 RS 9q31.2b(NCI)
chr9 110Mb AL137019.6   AQ387266.1 SP6,
AQ387269.1 T7
9 RP11-80F13 C 9q31.3(FHCRC)
chr9 109Mb   SHGC-8776 AQ282461.1 SP6,
AQ282463.1 T7
9 RP11-165N19 S 9q31.3~33.1(SC)
chr9 113Mb AL158824.11   AQ415499.1 SP6,
AQ382633.1 T7
9 RP11-56P10 RS 9q31.3~33.3(SC)
chr9 115Mb AL137850.12   AQ115341.1 ,
CL423245.1 T7,
CL423243.1 SP6,
9 CTD-2151O24 9q32(FHCRC)
chr9 112Mb     AQ733997.1 T7  
9 RP11-10I9 C 9q32(FHCRC)
chr9 115Mb AL137066.15 SHGC-13420 B71734.1 SP6,
B71735.1 T7
9 RP11-16A3 C 9q32(FHCRC)
chr9 116Mb   SHGC-14379 B75427.1 T7,
B75426.1 SP6
9 RP11-16L21 C 9q32(FHCRC)
chr9 113Mb AL135787.13   B82546.1 T7  
9 RP11-18A3 C 9q32(FHCRC)
chr9 111Mb AL359963.29, AC026928.2*u   B85468.1 SP6  
9 RP11-57O13 C 9q32(FHCRC)
chr9 112Mb   SHGC-37372, SHGC-37372*u AQ115372.1 ,
9 RP11-89N14 C 9q32(FHCRC)
chr9 113Mb     AQ286653.1 T7,
AQ286651.1*u SP6
9 RP11-110L1 S 9q32~33.2(SC)
chr9 114Mb AL449305.4 SHGC-13420 AQ318996.1 T7,
AQ350764.1 SP6
9 RP11-386D8 C 9q32~33(FHCRC)
chr9 113Mb AL354661.14 RH10440 BH152856.1 SP6,
BH152889.1 T7
9 RP11-412H14 S 9q32~33.3(SC)
chr9 111Mb AL135789.18   AQ548394.1 T7,
AQ536173.1 SP6
9 RP11-45A16 S 9q32~33.3(SC)
chr9 118Mb AL137024.27   AQ200271.1  
9 RP11-46P18 C 9q32~33(FHCRC)
chr9 116Mb   SHGC-8827 AQ201955.1 ,
9 RP11-623K5 S 9q32~33.3(SC)
        AQ370293.1*u SP6  
9 RP11-9H12 S 9q32~33.3(SC)
chr9 114Mb AL449105.22   B72555.1 T7  
9 RP11-9M16 C 9q32~33(FHCRC)
chr9 116Mb AL138895.16 SHGC-4320 B72625.1 T7  
9 RP11-696J10 S 9q32~34.11(SC)
chr9 118Mb AL354981.41   AQ613707.1 SP6,
AQ498531.1*u T7
9 RP11-78H18 S 9q32~34.11(SC)
chr9 116Mb AL133412.7 SHGC-32411 AQ281288.1 T7,
AQ281286.1 SP6
9 RP11-102F20 C 9q33(FHCRC)
chr9 120Mb   SHGC-18078 AQ314754.1 SP6,
AQ315235.1 T7
9 RP11-116C10 C 9q33(FHCRC)
chr9 126Mb   SHGC-33874*d AQ349436.1 SP6,
AQ349439.1*d T7
9 RP11-116C10 C 9q33(FHCRC)
chr9 125Mb   SHGC-33874 AQ349439.1 T7,
AQ349436.1*d SP6
9 RP11-13C11 C 9q33(FHCRC)
chr9 126Mb   SHGC-8113 B73267.1 T7  
9 RP11-142K22 C 9q33(FHCRC)
chr9 124Mb     AQ385801.1 SP6,
AQ385802.1 T7
9 RP11-150L1 C 9q33(FHCRC)
chr9 119Mb   SHGC-20572 AQ374736.1 T7,
AQ374735.1 SP6
9 RP11-44C14 C 9q33(FHCRC)
chr9 118Mb AC007940.3,
SHGC-35708, SHGC-35708*u AQ201563.1 ,
9 RP11-451A16 C 9q33(FHCRC)
chr9 120Mb AC141456.1   AQ583042.1 T7,
AQ583038.1 SP6
9 RP11-451E16 C 9q33(FHCRC)
chr9 120Mb AC141457.1,
  AQ583185.1 T7,
AQ583183.1 SP6
9 RP11-46E19 C 9q33(FHCRC)
chr9 116Mb   SHGC-32411 AQ198552.1 ,
9 RP11-627N1 C 9q33(FHCRC)
chr9 124Mb     AQ439007.1 SP6  
9 RP11-74E13 C 9q33(FHCRC)
chr9 124Mb   SHGC-1298 AQ268413.1 SP6  
9 RP11-81N19 C 9q33(FHCRC)
chr9 129Mb     AQ282015.1 SP6,
AQ282016.1 T7
9 RP11-85P21 C 9q33(FHCRC)
chr9 121Mb   SHGC-1974 AQ282997.1*u T7  
9 RP11-88F16 C 9q33(FHCRC)
chr9 116Mb   SHGC-32411 AQ286717.1 SP6,
AZ516195.1 T7,
AQ286720.1*u T7
9 RP11-89P10 C 9q33(FHCRC)
chr9 122Mb     AQ286731.1 T7,
AQ286728.1*u SP6
9 RP11-90F15 C 9q33(FHCRC)
chr9 119Mb     AZ518442.1 T7,
AQ284233.1 T7
9 RP11-98E22 S 9q33.1~33.3(SC)
chr9 120Mb AL157780.12   AQ317553.1 T7  
9 RP11-67K19 RS 9q33.1~34.11(SC)
chr9 118Mb AL133284.13   AQ238563.1 T7,
9 RP11-297L11 S 9q33.1~34.12(SC)
chr9 123Mb AL442634.13   AQ505111.1 T7  
9 RP11-348K2 S 9q33.1~34.13(SC)
chr9 126Mb AL158075.11   AQ528573.1 T7,
AQ528570.1 SP6
9 RP11-601L1 C 9q33~34.1(FHCRC)
chr9 124Mb     AQ340974.2 SP6,
AQ339714.1*u T7
9 RP11-269P11 C 9q33~34(FHCRC)
chr9 127Mb AL359632.9   AQ479920.1 T7  
9 RP11-62A6 C 9q33~34(FHCRC)
chr9 126Mb   SHGC-34240 AQ199893.1 ,
9 RP11-91G7 C 9q33~34(FHCRC)
chr9 126Mb   SHGC-34240 AQ281363.1 SP6,
AQ281364.1 T7
9 RP11-57K1 RS 9q33.1c(NCI)
chr9 121Mb AL445683.11   AQ082644.1 ,
9 RP11-165P4 RS 9q33.2a(NCI)
chr9 122Mb AL137068.10   AQ418356.1 SP6,
AQ418377.1 T7
9 RP11-465E22 S 9q33.2~34.3(SC)
chr9 129Mb     AQ580936.1 T7,
AQ580934.1 SP6
9 RP11-474P12 R 9q33.3a(NCI)
chr9 126Mb AL451125.7   AQ635276.1 T7  
9 RP11-1M19 RS 9q33.3b(NCI)
chr9 128Mb AL356862.10   B49616.1 T7,
AQ312770.1 SP6
9 RP11-98H23 S 9q34.11~34.2(SC)
chr9 130Mb AL136108.5   AQ318130.1 SP6  
9 CTD-2063K20 C 9q34(FHCRC)
chr9 135Mb     B71023.1 SP6,
AQ247790.1 SP6,
9 RP11-1105F21 C 9q34(FHCRC)
chr9 140Mb     AQ678320.1 T7,
AQ682900.1 SP6
9 RP11-138E2 S 9q34.11~34.3(SC)
chr9 131Mb AL136141.13   AQ383677.1 SP6,
AQ383680.1 T7
9 RP11-203M2 C 9q34(FHCRC)
chr9 134Mb AL353701.15   AQ418591.1 T7,
AQ418589.1 SP6
9 RP11-317B10 C 9q34(FHCRC)
chr9 135Mb AL365494.17   AQ534940.1 T7  
9 RP11-409K20 C 9q34(FHCRC)
chr9 131Mb AL158207.15 RH10633 BH152859.1 SP6,
AQ535260.1 T7,
BH152870.1 T7,
AQ548809.1 SP6
9 RP11-56D16 C 9q34(FHCRC)
chr9 129Mb AL162426.20   AQ115983.1  
9 RP11-57C19 RS 9q34.11~34.3(SC)
chr9 132Mb AL359092.14   AQ115418.1  
9 RP11-98L5 C 9q34(FHCRC)
chr9 137Mb AL354761.17 AA402883 AQ318466.1 T7,
AQ318463.1 SP6
9 RP11-168A7 R 9q34.12a~34.13a(NCI)
chr9 134Mb AL161726.7   AQ421808.1 T7,
AQ421807.1 SP6
9 RP11-479K20 S 9q34.12~34.3(SC)
chr9 134Mb AL159997.14   AQ628882.1 SP6  
9 RP11-166H7 S 9q34.13~34.3(SC)
chr9 137Mb AL159992.13   AQ419084.1 SP6,
AQ419085.1 T7
9 RP11-326L24 S 9q34.13~34.3(SC)
chr9 134Mb AL162417.23   AQ538812.1 SP6,
AQ548837.1 T7
9 RP11-40A7 CS 9q34.13~34.3(SC)
chr9 133Mb AL160276.21 RH62909 AQ029591.1  
9 RP11-143I20 C 9q34.2(FHCRC)
chr4 13Mb   SHGC4-390 AQ389827.1 T7,
AQ389825.1 SP6
9 RP11-17O4 C 9q34.2(FHCRC)
chr9 131Mb   SHGC-215 B81878.1 SP6  
9 RP11-266G16 C 9q34.2(FHCRC)
chr9 133Mb     AQ490042.1 SP6,
AQ490043.1 T7
9 RP11-81L11 C 9q34.2(FHCRC)
chr9 133Mb   RH62909 AZ516041.1 SP6,
AQ281837.1 T7
9 RP11-81P5 C 9q34.2(FHCRC)
chr9 134Mb   SHGC-16732 AQ282038.1 SP6,
AQ282040.1 T7
9 RP11-89B23 C 9q34.2(FHCRC)
chr9 134Mb     AQ283668.1 SP6,
AZ517728.1 T7,
AQ283670.1 T7
9 RP11-100C15 S 9q34.2~34.3(SC)
chr9 137Mb AL158822.19   AQ320286.1 SP6,
AQ320289.1 T7
9 RP11-153P4 S 9q34.2~34.3(SC)
chr9 135Mb AL590710.14   AQ389677.1 T7,
AQ416627.1 SP6
9 RP11-417A4 S 9q34.2~34.3(SC)
chr9 139Mb AL161451.21 RH63102 BH152861.1 SP6,
BH152871.1 T7,
AQ552829.1 T7
9 RP11-485N19 S 9q34.2~34.3(SC)
chr9 136Mb     AQ633891.1 T7  
9 RP11-48C7 S 9q34.2~34.3(SC)
chr9 139Mb AL365502.57   AQ195194.1*u  
9 RP11-611D20 S 9q34.2~34.3(SC)
chr9 138Mb AL354671.27   AQ360458.1*u T7,
AQ366632.1*u SP6
9 RP11-654H17 S 9q34.2~34.3(SC)
chr9 135Mb BX842659.4   AQ430270.1*u T7,
AQ609452.1*u SP6
9 RP11-89J21 C 9q34.2~34.3(FHCRC)
chr9 138Mb     AZ517794.1 T7  
9 RP11-92B21 RS 9q34.2~34.3(SC)
chr9 136Mb AL158031.11   AQ321559.1 T7,
AQ321558.1 SP6
9 RP11-451O4 C 9q34.3(FHCRC)
chr9 136Mb     AQ584118.1 T7  
9 RP11-643E14 S 9q34.3(SC)
chr9 133Mb AL354855.26   AQ401536.1 T7,
AQ408888.1 SP6
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
9 RP11-90B11 C 9q34.3(FHCRC)
chr9 137Mb     AQ283525.1 T7,
AZ517978.1 T7,
AQ283522.1 SP6
9 RP11-120E1 R 9q34.3b(NCI)
chr9 138Mb AL591038.9   AQ349066.1 SP6,
AQ349067.1 T7
total298C:177 R:47 S:126298293 177116298 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.