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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones

FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
5 CTB-116F8 R 5pter(UCSF)
chr5 2Mb   D5S1970    
5 CTB-27I9 R 5pter(UCSF)
chr5 8Mb   D5S1957    
5 CTB-27O23 R 5pter(UCSF)
chr5 4Mb   WI-2725    
5 CTB-3J12 R 5pter(UCSF)
chr5 8Mb   D5S1957    
5 CTB-47L22 R 5pter(UCSF)
chr5 3Mb   D5S675, D5S675*u    
5 CTB-54B24 R 5pter(CSMC)
chr5 3Mb   AFMA217YH1    
5 CTC-233K13 R 5pter(UCSF)
chr5 3Mb   D5S675, D5S675*u    
5 RP11-103L11 C 5p15.3(FHCRC)
chr5 3Mb AC092319.2 D5S675, AFM336TC1*u AQ314012.1 T7,
AQ314009.1 SP6
5 RP11-20B3 C 5p15.3(FHCRC)
chr5 3Mb AC026263.1, AC013664.2*u AFM205WH8, AFM205WH8*u B88669.1 SP6,
B83785.1 T7
5 RP11-227M19 C 5p15.3(FHCRC)
chr5 3Mb   AFM154XA3    
5 RP11-58A5 CR 5p15.3(FHCRC)
chr5 4Mb   D5S406, AFM154XG3, AFM154XG3*u CG734273.1 SP6,
AQ195759.1 ,
CG734274.1 T7,
BZ749161.1 T7,
5 RP11-82M24 CR 5p15.3(FHCRC)
chr5 3Mb   AFMA217YH1 BZ749188.1 SP6,
BZ749189.1 T7
5 RP11-94J21 CR 5p15.3(FHCRC)
chr5 1Mb AC009170.6 AFMB002XC1 AQ281737.1 SP6,
AQ315935.1 T7
5 CTB-11I4 R 5p15.3~15.2(CSMC)
chr5 5Mb   D5S406    
5 RP11-35K22 CR 5p15.2~15.3(FHCRC)
chr5 5Mb   AFMB355WB1 CG734275.1 SP6,
AQ047185.1 ,
CG734276.1 T7,
BZ749129.1 T7,
5 RP11-46O23 CR 5p15.2~15.3(FHCRC)
chr5 7Mb   D5S676, AFM347YG9*u BZ749135.1 SP6,
AQ199749.1 ,
BZ749136.1 T7
5 CTB-28D11 R 5p15(UCSF)
chr5 16Mb AC010607.8 D5S2114    
5 CTB-51A22 R 5p15(UCSF)
chr5 15Mb   D5S1989    
5 CTB-66F23 R 5p15(UCSF)
chr5 5Mb   D5S406, D5S406*u, D5S406*u    
5 CTC-248O4 R 5p15(UCSF)
chr5 5Mb AC063974.3 D5S464    
5 CTC-263B18 R 5p15(UCSF)
chr5 11Mb   D5S2897    
5 CTC-326E20 R 5p15~pter(UCSF)
chr5 1Mb   D5S1981    
5 RP11-72C10 CR 5p15.2(FHCRC)
chr5 10Mb   AFM255XB9, AFM255XB9*u BZ749180.1 SP6,
CG734281.1 SP6,
AQ267115.1 SP6,
CG734282.1*u T7
5 CTB-178K9 R 5p15.2(UCSF)
chr5 11Mb   D5S1987    
5 CTB-19C18 R 5p15.2(CSMC)
chr5 10Mb   D5S1976    
5 CTB-33B3 R 5p15.2(UCSF)
5 RP11-145B1 CR 5p15.2(FHCRC)
chr5 10Mb   AFM042XA11 AQ373835.1 SP6,
AQ373841.1 T7
5 RP11-1C1 C 5p15.2(FHCRC)
chr5 10Mb AC011135.3,
Z39541 AQ311597.1 SP6,
B48319.1 T7
5 RP11-215G15 C 5p15.2(FHCRC)
chr5 10Mb AC023112.4,
AFM255XB9, AFM255XB9*u    
5 RP11-260E18 C 5p15.2(FHCRC)
chr5 16Mb AC024588.4 D5S416, AFM205WH10*u AQ486951.1 T7,
AQ486949.1 SP6
5 RP11-29N3 CR 5p15.2(FHCRC)
chr5 11Mb   D5S1987 BZ749123.1 T7,
BZ749122.1 SP6
5 RP11-36H5 C 5p15.2(FHCRC)
chr5 6Mb   AFM276YB9, AFM276YB9*u AQ047070.1 T7  
5 RP11-5N8 CR 5p15.2(FHCRC)
chr5 14Mb   AFMA282WA5 B69658.1 T7,
B48185.1 T7,
AZ517022.1 SP6
5 RP11-261B20 CR 5p15.1c(NCI)
chr5 15Mb   D5S1954 BZ749111.1 SP6,
AQ486902.1 T7,
BZ749112.1 T7
5 CTB-21B6 R 5p15.2~15.1(CSMC)
chr5 175Mb   WI-13355, UTR-02579    
5 RP11-269O14 CR 5p15.1a(NCI)
chr5 16Mb   AFMA140VD1 BZ749115.1 SP6,
BZ749116.1 T7
5 RP11-91D3 C 5p14.3~15.2(FHCRC)
      AFMB354WC5*u AZ518768.1*u T7  
5 CTA-402F12 R 5p15.1(CSMC)
chr5 31Mb   D5S477    
5 RP11-135M13 C 5p14.3~15.1(FHCRC)
chr5 15Mb   D5S1989 AQ379651.1 T7,
AQ379648.1 SP6
5 RP11-88L18 CR 5p14.3~15.1(FHCRC)
chr5 17Mb   AFM105XG1 AZ516846.1 T7,
AQ281510.1 T7,
AQ281504.1 SP6
5 CTB-7J24 R 5p15.1~14(CSMC)
chr5 21Mb   AFM324VC5, AFM308VF9    
5 CTB-120E10 R 5p14(UCSF)
chr5 24Mb   D5S1735    
5 CTB-14L5 R 5p14(CSMC)
chr5 21Mb   AFM324VC5    
5 CTB-62F24 R 5p14(UCSF)
chr5 30Mb   Afm284vc1    
5 CTA-393F9 R 5p14~13.3(CSMC)
chr5 29Mb   D5S1861    
5 RP11-5N11 CR 5p13.3~14(FHCRC)
chr5 31Mb AC022447.6 AFMA238ZA9 CG734283.1 SP6,
B49300.1 SP6,
CG734284.1 T7,
BZ749167.1 SP6
5 CTB-13O21 R 5p13(CSMC)
chr5 31Mb   AFMA286YA9    
5 RP11-152K4 C 5p13~14(FHCRC)
chr5 31Mb AC091898.2 AA421819    
5 RP11-422J14 C 5p13~14(FHCRC)
chr5 32Mb AC022444.7 SGC34914 BH634728.1 SP6,
AQ547511.1 SP6,
AQ547512.1 T7,
BH634727.1 T7
5 RP11-67P13 C 5p13~14(FHCRC)
chr5 32Mb   AFMA297WA5 AQ203105.1 ,
5 CTA-36F2 R 5p13.3(CSMC)
chr5 36Mb   D5S455    
5 CTA-390E7 R 5p13.3(CSMC)
chr5 36Mb   D5S455    
5 CTB-18A6 R 5p13.3(CSMC)
chr5 31Mb   D5S477    
5 CTA-390G1 R 5p13.3~13.2(CSMC)
chr5 31Mb   D5S477    
5 CTB-11I7 R 5p13(CSMC)
chr5 35Mb   AFMA066WG5    
5 CTB-13O8 R 5p13(CSMC)
chr5 38Mb   D5S2105    
5 CTC-221E3 R 5p13(UCSF)
chr5 33Mb   D5S651    
5 RP11-138C1 C 5p13(FHCRC)
chr5 39Mb AC025471.6 N64862 AQ382818.1 T7,
AQ382814.1 SP6
5 RP11-60A21 C 5p13(FHCRC)
chr5 38Mb AC090076.1 N67017 AQ200892.1 ,
5 RP11-67N10 C 5p13(FHCRC)
chr5 35Mb   AFM063YB6, AFM063YB6*u AQ199077.1 ,
AZ519016.1 T7,
5 RP11-85N3 CR 5p13(FHCRC)
chr5 35Mb AC112486.2, AC068818.2*u AFM063YB6, AFM063YB6*u CG734285.1 SP6,
BZ749190.1 SP6,
CG734286.1 T7,
AQ282986.1 T7
5 RP11-94E6 CR 5p13(FHCRC)
chr5 33Mb   D5S2062 AQ314396.1 T7,
AQ314394.1 SP6
5 RP11-19F12 CR 5p12~13(FHCRC)
chr5 41Mb AC016271.2*u AFM276VB1, D5S420, AFM207YG5, AFM329YB9*u, AFM276VB1*u, AFM042XA11*u B92191.1 SP6,
B82983.1 T7
5 CTB-161H9 R 5p13.2(UCSF)
chr5 30Mb   D5S2061    
5 CTB-38G24 R 5p13.2(UCSF)
chr5 33Mb   D5S1506    
5 CTC-205M18 R 5p13.2(UCSF)
chr5 30Mb   D5S2061    
5 CTC-269D19 R 5p13.2(UCSF)
chr5 37Mb   D5S2021    
5 CTC-270H19 R 5p13.2(UCSF)
chr5 41Mb   D5S420    
5 RP11-253B9 CR 5p13.2(FHCRC)
chr5 37Mb   AFM155XH12 CG734287.1 SP6,
BZ749107.1 SP6,
CG734288.1 T7
5 RP11-8C23 C 5p13.2(FHCRC)
chr5 34Mb AC107616.3, AC011042.3*u AFM238WE11, AFM238WE11*u B72299.1 SP6,
B72300.1 T7
5 CTA-398D11 R 5p13.1(CSMC)
chr5 31Mb   D5S477    
5 CTB-15H22 R 5p12(CSMC)
chr5 44Mb   AFMA049VH1    
5 CTD-2273H24 R 5p12(UCSF)
chr5 38Mb   AFMA274WC9, stSG52528, D5S2471, stSG31367, human.LIFR AQ663659.1 T7  
5 RP11-9G14 C 5p12(FHCRC)
chr5 41Mb   AFM276VB1, AFM276VB1*u    
5 RP11-203O23 CR 5q11.1~11.2(FHCRC)
chr5 55Mb   AFM311YD1 AQ417179.1 SP6,
AQ417181.1*u T7
5 CTB-22L19 R 5q(CSMC)
chr5 0Mb AC016572.6 WI-15997, AFMB005WF9, G50765*u   multiple_placements_on_genome
5 CTB-22L19 R 5q(CSMC)
chr5 180Mb AC016572.6*d WI-15997, AFMB005WF9, G50765*u   multiple_placements_on_genome
5 CTB-19C6 R 5q11.2(CSMC)
chr5 52Mb   D5S2092    
5 CTB-5H2 R 5q11.2(CSMC)
chr5 58Mb   D5S2028    
5 RP11-148P21 C 5q11.2(FHCRC)
chr5 55Mb   AFM274XA5, AFM274XA5*u AQ376413.1 T7,
AQ376398.1 SP6
5 RP11-160F8 CR 5q11.2(FHCRC)
chr5 53Mb AC034246.4 AFM254WF1, AFM254WF1*u AZ516879.1 SP6,
AQ377832.1 T7
5 RP11-17H13 CR 5q11.2(FHCRC)
chr5 54Mb   D5S2076 CG734289.1 SP6,
CG734290.1 T7,
B88037.1 T7,
B82700.1*u T7
5 RP11-22L20 C 5q11.2(FHCRC)
chr5 55Mb   AFM163XA11 B86322.1 T7,
B92236.1 SP6
5 RP11-47P7 C 5q11.2(FHCRC)
chr5 56Mb   D5S491, AFM218XF12 AQ202853.1  
5 RP11-143O12 CR 5q11.2(FHCRC)
chr5 55Mb AC021572.2 AFM274XA5, AFM274XA5*u AQ371733.1 T7,
AQ371730.1 SP6
5 RP11-190C5 CR 5q11.2~12(FHCRC)
chr5 57Mb   AFM095ZB7, AFM095ZB7*u BZ749066.1 T7,
BZ749065.1 SP6
5 RP11-59G13 CR 5q11.2~12(FHCRC)
chr5 57Mb   D5S2028 BZ749166.1 SP6,
CG734291.1 SP6,
CG734292.1 T7,
5 RP11-19I19 CR 5q11.2g~11.2h(NCI)
chr5 58Mb   D5S431 AQ003243.1 T7,
AQ003242.1 SP6
5 CTB-53E19 R 5q12(CSMC)
chr5 66Mb   D5S2121    
5 CTD-2041D13 C 5q12(FHCRC)
chr5 69Mb   U18423, Hs.241572*u AQ230179.1 T7,
AQ230483.1 SP6
5 CTD-2041D13 C 5q12(FHCRC)
chr5 70Mb   U18423, Hs.241572*u AQ230179.1 T7,
AQ230483.1 SP6
5 RP11-15P2 CR 5q12(FHCRC)
chr5 66Mb AC063978.3 D5S647, AFM292VE1*u B75410.1 T7,
B75409.1 SP6
5 RP11-174I22 CR 5q12(FHCRC)
chr5 62Mb   D5S427, AFM238XA3*u BZ749057.1 T7,
BZ749056.1 SP6
5 RP11-267K19 C 5q12(FHCRC)
chr5 67Mb   AFMB281YB9    
5 RP11-278A17 C 5q12(FHCRC)
5 RP11-79C4 C 5q12(FHCRC)
chr5 62Mb AC016646.6 D5S427, AFM238XA3*u AQ581270.1 SP6,
AZ519144.1 SP6,
AQ282430.1 SP6,
AQ581271.1 T7,
AQ282432.1 T7
5 RP11-87D20 C 5q12(FHCRC)
chr5 66Mb   D5S2072    
5 RP11-40N8 CR 5q12(FHCRC)
chr5 67Mb   D5S2046 CG734294.1 T7,
CG734293.1 SP6,
BZ749131.1 SP6
5 RP11-97L2 C 5q12~13(FHCRC)
chr5 73Mb AC041042.4 H72122 AQ320791.1 T7,
AQ320790.1 SP6
5 CTA-395C3 R 5q13(CSMC)
chr5 74Mb   D5S1858, D5S1738    
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
5 CTB-13M13 R 5q13(CSMC)
chr5 76Mb   D5S1977    
5 CTB-18L3 R 5q13(CSMC)
chr5 71Mb   D5S637    
5 CTB-19B16 R 5q13(CSMC)
chr5 81Mb   D5S620    
5 CTB-40O8 R 5q13(CSMC)
chr5 67Mb   D5S2046    
5 CTB-47B5 R 5q13(CSMC)
chr5 63Mb   IB482    
5 CTB-61B1 R 5q13(CSMC)
chr5 85Mb   D5S428    
5 CTB-7P17 R 5q13(CSMC)
chr5 76Mb   D5S1962    
5 RP11-142O7 C 5q13(FHCRC)
chr16 8Mb   SHGC-701 AQ389850.1 T7,
AQ389848.1 SP6
5 RP11-62D9 CR 5q13(FHCRC)
chr5 76Mb   D5S1977 CG734297.1 SP6,
AQ194008.1 ,
CG734298.1 T7
5 RP11-1E10 CR 5q13(FHCRC)
chr5 78Mb   AFM324WH1 BZ749083.1 SP6,
BZ749084.1 T7
5 CTB-19F16 R 5q13~14(CSMC)
chr5 67Mb   AFMB281YB9    
5 RP11-47N20 CR 5q13~14(FHCRC)
chr5 81Mb   D5S2029 AQ194964.1 ,
BZ749138.1 T7,
BZ749137.1 SP6
5 CTD-2014G23 R 5q13.2(UCSF)
chr5 68Mb AC109996.3 UTR-04815 AQ304906.1*u SP6  
5 RP11-172K14 CR 5q13.2(FHCRC)
chr5 74Mb   AFMA348WD1 CG734295.1 SP6,
BZ749053.1 SP6,
CG734296.1 T7,
AQ414408.1*u SP6
5 RP11-1H14 CR 5q13.2(FHCRC)
chr5 77Mb AC015454.3 AFM290VF5*u B63223.1 T7,
B48373.1 SP6
5 CTB-7D23 R 5q13.3(CSMC)
chr5 76Mb   D5S1962    
5 RP11-81H9 C 5q14.1(FHCRC)
chr5 81Mb AC106824.2 D5S2029 AZ521594.1 SP6,
AQ281608.1 SP6,
AZ521596.1 T7,
AQ281612.1 T7
5 RP11-207B2 CR 5q14.1(FHCRC)
chr5 81Mb   D5S620, AFM200WA5*u BZ749088.1 T7,
BZ749087.1 SP6
5 RP11-275E14 CR 5q14.1(FHCRC)
chr5 82Mb   D5S1948 AQ509086.1 SP6,
CG734277.1 SP6,
CG734278.1 T7,
BZ749118.1 T7
5 CTB-51M1 R 5q14(CSMC)
chr5 86Mb   D5S617    
5 RP11-135F5 CR 5q14(FHCRC)
chr5 85Mb   D5S617, AFM190XC11 AQ380700.1 SP6,
AQ380704.1*u T7
5 RP11-45O11 CR 5q14~15(FHCRC)
chr2 160Mb AC016264.3*u AFM198WG9*d, AFM198WG9*u AQ200228.1 ,
AQ200227.1 ,
CL423179.1*d SP6,
CL423185.1*d T7
5 RP11-45O11 CR 5q14~15(FHCRC)
chr5 89Mb AC016264.3*u AFM198WG9, AFM198WG9*u CL423179.1 SP6,
CL423185.1 T7,
AQ200227.1*d ,
5 RP11-258M21 R 5q14.3d(NCI)
chr5 85Mb   D5S428, AFM238XF4, AFM238XF4*u AQ483737.1 T7,
AQ483734.1 SP6
5 CTA-394G6 R 5q15(CSMC)
chr5 96Mb   D5S484, AFM203VA3*u    
5 CTB-11H23 R 5q15(CSMC)
chr5 94Mb   IB3299    
5 CTB-17E22 R 5q15(CSMC)
chr5 88Mb   D5S401    
5 RP11-204D12 CR 5q15~21(FHCRC)
chr5 95Mb   AFM302YG5, AFM302YG5*u BZ749085.1 SP6,
BZ749086.1 T7
5 RP11-58M12 C 5q15~21(FHCRC)
chr5 98Mb AC021449.3,
WI-13675 AQ199227.1 ,
5 CTD-2079J2 C 5q21(FHCRC)
chr5 108Mb   WI-6744, RH59898, SGC31298, stSG39082    
5 RP11-115L24 CR 5q21(FHCRC)
chr5 103Mb AC009815.2 D5S505, AFM268VB1*u AQ348042.1 T7,
AQ348041.1 SP6
5 RP11-18K11 C 5q21(FHCRC)
chr9 34Mb AC013784.2*u SHGC-37670 B88116.1 SP6,
B88117.1 T7
5 RP11-203J7 CR 5q21(FHCRC)
chr5 102Mb   AFM184YB6, AFM184YB6*u AQ419291.1 SP6,
AQ419293.1 T7
5 RP11-252I13 CR 5q21(FHCRC)
chr5 106Mb AC024587.5 D5S475 AQ481343.1 T7,
AQ481330.1 SP6
5 RP11-277N18 C 5q21(FHCRC)
chr5 106Mb   D5S2084 AQ505668.1 SP6,
AQ505669.1 T7
5 RP11-89L24 C 5q21(FHCRC)
chr5 111Mb   D5S1965 AQ318513.1 T7  
5 RP11-13O21 CR 5q21~22(FHCRC)
chr5 111Mb   D5S1965 AZ521184.1 SP6,
B73296.1 T7
5 CTB-18F10 R 5q22(CSMC)
chr5 112Mb   AFM210VD6    
5 CTB-43I9 R 5q22(CSMC)
chr5 113Mb   AFMC031XB5    
5 CTB-6E10 R 5q22(CSMC)
chr5 112Mb   WI-7634    
5 RP11-13F18 C 5q22(FHCRC)
chr6 1Mb AC011579.5 AFM092XB7 B76036.1 T7,
B76035.1 SP6
5 RP11-64F17 C 5q22(FHCRC)
chr5 112Mb   AFM210VD6 AQ237953.1 T7,
AQ237952.1 SP6
5 RP11-58G19 CR 5q22.3a(NCI)
chr5 113Mb   AFMC031XB5 AQ196074.1 ,
BZ749162.1 SP6,
BZ749163.1 T7,
5 RP11-182C19 C 5q22~23(FHCRC)
chr5 116Mb   D5S404    
5 RP11-81C5 CR 5q22~23(FHCRC)
chr5 115Mb   D5S2055 AQ284841.1 SP6,
AQ320568.1 T7
5 RP11-15P5 CR 5q23.1(FHCRC)
chr5 120Mb   D5S657 B75415.1 SP6,
B75416.1 T7
5 RP11-47L19 CR 5q23.1(FHCRC)
chr5 121Mb   D5S467, AFM127XD10 AQ200802.1 ,
CG734302.1 T7,
CG734301.1 SP6,
5 RP11-73N22 CR 5q23.1(FHCRC)
chr5 116Mb   AFM220YG5 CG734300.1 T7,
CG734299.1 SP6,
BZ749181.1 SP6
5 CTB-47M4 R 5q23(CSMC)
chr5 118Mb   MR14789    
5 CTD-2025J21 R 5q23(UCSF)
chr5 132Mb AC074127.2 WI-14977 AQ892483.1*u SP6  
5 CTD-2217M3 R 5q23(UCSF)
chr5 132Mb   WI-14977 AQ301575.1 T7  
5 RP11-209F21 CR 5q23(FHCRC)
chr5 124Mb   AFMC006XF9 BZ749090.1 T7,
BZ749089.1 SP6
5 RP11-265M23 CR 5q23(FHCRC)
chr5 122Mb   AFM205ZD4, D5S622 AQ489975.1 T7,
AQ489974.1 SP6
5 RP11-42M12 CR 5q23(FHCRC)
chr5 127Mb   D5S649 AQ116131.1 ,
CG734304.1 T7,
CG734303.1 SP6,
BZ749132.1 SP6,
5 RP11-45L19 C 5q23(FHCRC)
chr5 128Mb   D5S642, AFM286XG9 AQ195651.1 ,
5 RP11-81L1 C 5q23(FHCRC)
chr5 122Mb   AFM205ZD4, D5S622 AQ281821.1 SP6,
AQ281823.1*u T7
5 CTA-392G3 R 5q31.1(CSMC)
chr5 135Mb   D5S399    
5 CTA-402A5 R 5q31.1(CSMC)
chr5 136Mb   D5S2447    
5 RP11-4E3 CR 5q31.1(FHCRC)
chr5 133Mb   AFMB354ZC9 BZ749142.1 SP6,
BZ749143.1 T7,
B48020.1 T7
5 RP11-21C10 C 5q31.1~31.2(FHCRC)
chr5 133Mb AC106763.2 AFM042XF8 B83103.1 SP6,
B85803.1 T7,
AQ008903.1 T7
5 CTA-386F6 R 5q31(CSMC)
chr5 133Mb   AFM042XF8 B68183.1 T7,
B63083.1 T7
5 CTA-399G11 R 5q31(CSMC)
chr5 141Mb   SHGC-12659, D5S1863, D5S1840    
5 CTA-400B9 R 5q31(CSMC)
chr5 138Mb   D5S1856    
5 CTA-78C5 R 5q31(CSMC)
chr5 133Mb   AFM042XF8 B68118.1 T7  
5 CTB-10C19 R 5q31(CSMC)
chr5 139Mb   AFMA102ZF1, CD14, CD14*u    
5 CTB-17M1 R 5q31(CSMC)
chr5 139Mb   AFMB021ZC1    
5 CTB-1I21 R 5q31(CSMC)
chr5 136Mb AC109439.3 bac5129T    
5 CTB-53D8 R 5q31(CSMC)
chr5 128Mb AC008679.5 AFMA103ZA9, G38641    
5 CTB-60P23 R 5q31(CSMC)
chr5 140Mb AC008688.7 G61762, AFM308ZA9, G56273, G08489, G61710    
5 RP11-21J3 CR 5q31(FHCRC)
chr5 134Mb   AFM066XF11, AFM066XF11*u BZ749099.1 SP6,
BZ749100.1 T7,
B84008.1 T7
5 RP11-233E5 CR 5q31(FHCRC)
chr5 137Mb   AFM200YA9, AFM200YA9*u BZ749101.1 SP6,
CG734305.1 SP6,
CG734306.1 T7
5 CTD-2090L24 C 5q31.2(FHCRC)
chr5 135Mb   Hs.118787 AQ559100.1*u SP6  
5 RP11-55M16 CR 5q31.3(FHCRC)
chr5 179Mb   AFMA217XD1*d BZ749155.1 T7,
BZ749154.1 SP6,
AQ082942.1*d ,
5 RP11-55M16 CR 5q31.3(FHCRC)
chr5 141Mb   AFMA217XD1 AQ082942.1 ,
AQ082943.1 ,
BZ749154.1*d SP6,
BZ749155.1*d T7
5 RP11-115I4 CR 5q31.3~32(FHCRC)
chr5 139Mb   AFMA102ZF1 AQ345468.1 SP6,
AQ345482.1 T7
5 RP11-14K13 CR 5q31.3~32(FHCRC)
chr5 141Mb   AFMB074XG1 B76290.1 T7,
B76289.1 SP6
5 CTB-14M20 R 5q32(CSMC)
chr5 141Mb   AFMB074XG1    
5 CTB-16P5 R 5q32(CSMC)
chr5 146Mb   AFMA052VD5    
5 RP11-19C10 CR 5q32(FHCRC)
chr5 147Mb   AFMA052TH5 BZ749079.1 T7,
BZ749078.1 SP6
5 RP11-216N13 C 5q32(FHCRC)
chr5 147Mb   AFMA052TH5, AFM276WD5, AFM276WD5*u    
5 RP11-44B19 C 5q32(FHCRC)
chr5 148Mb AC116312.2 AFM198ZH6 AQ203068.1 ,
5 RP11-82P23 C 5q32(FHCRC)
chr5 148Mb   AFM198ZH6    
5 RP11-109G16 CR 5q32(FHCRC)
chr5 147Mb   AFMA052TH5, AFM276WD5, AFM276WD5*u BZ749027.1 SP6,
CG734307.1 SP6,
CG734308.1 T7
5 RP11-128C13 CR 5q32~33(FHCRC)
chr5 149Mb   AFM144ZH4, AFM144ZH4*u CG734310.1 T7,
CG734309.1 SP6,
BZ749031.1 SP6
5 RP11-54C4 C 5q32~33(FHCRC)
chr5 151Mb AC091982.3 AA449834 AQ082723.1 ,
AQ082725.1 T7
5 CTA-388H2 R 5q33(CSMC)
chr5 149Mb   D5S2015    
5 CTB-3B12 R 5q33(CSMC)
chr5 153Mb AC008672.5 G38426, AFMA071ZF9, G32468, G33236    
5 CTB-3C20 R 5q33(CSMC)
chr5 155Mb AC010304.8 AFM210VG3, G61982, AFM210VG3*u, D5S487*u    
5 CTB-45J9 R 5q33(CSMC)
chr5 153Mb   AFMA071ZF9    
5 CTB-4E7 R 5q33(CSMC)
chr5 156Mb AC010609.7 AFMA083XB9    
5 CTB-5M9 R 5q33(CSMC)
chr5 149Mb   G10640, D5S2015, HSB035ZE1, G22251    
5 RP11-109B15 C 5q33(FHCRC)
chr5 151Mb   AFM329TF5 AQ322002.1 T7,
AQ350073.1 SP6
5 RP11-170L13 CR 5q33(FHCRC)
chr5 155Mb AC114959.2 AFM311VF9 AQ412570.1 SP6,
AQ412573.1 T7
5 RP11-86C20 CR 5q33(FHCRC)
chr5 152Mb AC091991.2 AFM191XD8, AFM191XD8*u BZ749192.1 T7,
BZ749191.1 SP6
5 CTB-41N23 R 5q33~34(CSMC)
chr5 157Mb   AFMB343XE9    
5 RP11-134N14 C 5q33~34(FHCRC)
chr5 157Mb   AFMC008ZF9 AQ379038.1 T7,
AQ379036.1 SP6
5 RP11-4J6 C 5q33~34(FHCRC)
chr5 158Mb   AFM198WE11, AFM198WE11*u B48063.1 T7  
5 RP11-82E8 CR 5q33.3c(NCI)
chr5 157Mb   AFMB343XE9 CG734312.1 T7,
CG734311.1 SP6
5 RP11-47O12 C 5q33.2(FHCRC)
chr5 156Mb   AFMA083XB9 AQ199694.1  
5 RP11-31B18 CR 5q33.2(FHCRC)
chr5 155Mb   AFM210VG3, AFM210VG3*u BZ749126.1 SP6,
AQ046067.1 ,
BZ749127.1 T7,
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
5 CTB-21F8 R 5q34(CSMC)
chr5 168Mb   WI-14817, D5S400, AFM112YB6    
5 CTB-37A13 R 5q34(CSMC)
chr5 169Mb AC010303.7 MR4102    
5 RP11-128E4 C 5q34(FHCRC)
chr5 164Mb   AFMB317YD9    
5 RP11-13H20 CR 5q34(FHCRC)
chr5 164Mb   AFM214ZA9, AFMB317YD9 B76068.1 SP6,
B76069.1 T7
5 RP11-173F9 C 5q34(FHCRC)
chr5 164Mb   AFM214ZA9, AFMB317YD9 AQ416442.1 SP6  
5 RP11-210K16 C 5q34(FHCRC)
chr5 160Mb   D5S1955, D5S2118    
5 RP11-233E7 C 5q34(FHCRC)
5 RP11-35O10 C 5q34(FHCRC)
chr5 166Mb   AFM234VH4, AFM234VH4*u    
5 RP11-62G13 C 5q34(FHCRC)
chr5 160Mb   D5S1955, D5S2118 AQ198720.1 ,
5 RP11-88J19 CR 5q34(FHCRC)
chr5 162Mb   AFM211YC7, D5S422 BZ749198.1 T7,
BZ749197.1 SP6
5 RP11-90N23 CR 5q34(FHCRC)
chr5 159Mb   D5S403, AFM136XD2 CG734313.1 T7,
AZ518644.1 T7,
AQ285212.1 T7
5 RP11-94L2 C 5q34(FHCRC)
chr5 163Mb   AFMC033XH1 AQ323703.1 SP6,
AQ323705.1 T7
5 RP11-14K9 CR 5q34~35(FHCRC)
chr5 168Mb   D5S400, AFM112YB6 B75253.1 T7,
B75252.1 SP6
5 RP11-15F10 CR 5q34~35(FHCRC)
chr5 169Mb   AFM265VG5, AFM265VG5*u B76408.1 SP6,
B76409.1 T7
5 RP11-182E4 CR 5q34~35(FHCRC)
chr5 170Mb   AFM210VF12 BZ749061.1 SP6,
BZ749062.1 T7
5 CTB-10G22 R 5q35.1(CSMC)
chr5 170Mb   bac51036T, AFM304XD5, AFM304XD5*u    
5 CTA-394H4 R 5q35(CSMC)
chr5 179Mb   D5S408    
5 CTB-18F11 R 5q35(CSMC)
chr5 174Mb   D5S2403    
5 RP11-105L4 C 5q35(FHCRC)
chr5 172Mb   AFM302WC9, AFM350XH1, AFM350XH1*u AQ319732.1 T7,
AQ319729.1 SP6
5 RP11-125L2 CR 5q35(FHCRC)
chr5 173Mb   AFMC005WG1 AQ344954.1 SP6,
AQ344955.1 T7
5 RP11-193D11 C 5q35(FHCRC)
chr5 172Mb   AFM057XH8    
5 RP11-2I16 CR 5q35(FHCRC)
chr5 177Mb   AFMB307ZA9 B63629.1 T7,
B48559.1 SP6
5 RP11-48K2 CR 5q35(FHCRC)
chr5 172Mb   AFM350XH1, AFM350XH1*u CG734279.1 SP6,
AQ198318.1 ,
CG734280.1 T7,
BZ749139.1 T7,
5 RP11-51D11 CR 5q35(FHCRC)
chr5 141Mb   AFM323YH1*u BZ749149.1 T7,
BZ749148.1 SP6
5 RP11-69A18 C 5q35(FHCRC)
chr5 171Mb   AFM242XB10 AQ241290.1 SP6,
AQ241292.1 T7
5 RP11-88L12 C 5q35(FHCRC)
chr5 172Mb   AFM057XH8 AZ516840.1 T7,
AQ281489.1 T7
5 RP11-9I14 C 5q35(FHCRC)
chr5 171Mb   AFM102XC1    
total223C:132 R:163 S:0223219 44223122 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.