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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
21 RP11-22D1 C 21q11.1~11.2(FHCRC)
chr21 15Mb     E  
21 RP11-89H16 CR 21q11.1~11.2(FHCRC)
chr21 15Mb   M E  
21 RP11-91N21 C 21q11.1~11.2(FHCRC)
chr21 14Mb     E  
21 RP11-61A21 CR 21q11.1(FHCRC)
21q21.1b(NCI)
chr21 15Mb   M E  
21 RP11-89H21 C 21q11.2(FHCRC)
chr21 14Mb     E  
21 RP11-49J9 CR 21q11.2(FHCRC)
21q21.1f(NCI)
chr21 20Mb   M E  
21 RP11-181G18 C 21q11.2~21(FHCRC)
chr21 16Mb   M    
21 RP11-31B6 CR 21q11.2~21(FHCRC)
21q11.2d(NCI)
chr21 14Mb   M E  
21 RP11-15E10 C 21q21.1(FHCRC)
chr21 18Mb   M E  
21 CTB-18I14 R 21q21(CSMC)
chr21 29Mb   M    
21 CTB-19J2 R 21q21(CSMC)
chr21 29Mb   M    
21 CTB-56P3 R 21q21(CSMC)
chr21 31Mb   M    
21 CTD-2016H5 R 21q21(UCSF)
chr21 33Mb     E  
21 CTD-2035F24 C 21q21(FHCRC)
chr21 26Mb   M    
21 CTD-2059E17 R 21q21(UCSF)
chr21 33Mb     E  
21 CTD-2146L16 R 21q21(UCSF)
chr21 31Mb     E  
21 CTD-2183N21 R 21q21(UCSF)
        E  
21 CTD-2208A10 R 21q21(UCSF)
chr21 31Mb     E  
21 CTD-2231K11 R 21q21(UCSF)
        E  
21 CTD-2247C24 R 21q21(UCSF)
chr21 33Mb     E  
21 RP11-108H5 C 21q21(FHCRC)
chr21 26Mb   M E  
21 RP11-13J15 C 21q21(FHCRC)
chr21 24Mb A M E  
21 RP11-143A3 C 21q21(FHCRC)
chr21 18Mb   M    
21 RP11-15H6 C 21q21(FHCRC)
chr21 26Mb A M E  
21 RP11-44F3 C 21q21(FHCRC)
chr21 26Mb   M E  
21 RP11-53K11 C 21q21(FHCRC)
chr21 25Mb   M E  
21 RP11-64I12 C 21q21(FHCRC)
chr21 22Mb     E  
21 RP11-74D19 C 21q21(FHCRC)
chr21 28Mb   M E  
21 RP11-80N20 C 21q21(FHCRC)
chr21 23Mb     E  
21 RP11-86J21 C 21q21(FHCRC)
chr21 22Mb   M    
21 RP11-88D18 CR 21q21(FHCRC)
21q21.2a(NCI)
chr21 25Mb     E  
21 RP11-89H5 CR 21q21(FHCRC)
21q21.3c(NCI)
chr21 28Mb     E  
21 RP11-89M24 C 21q21(FHCRC)
chr21 15Mb A   E  
21 RP11-12M14 C 21q21~22.1(FHCRC)
chr21 31Mb   M E  
21 RP11-191I6 C 21q21~22.1(FHCRC)
chr21 31Mb   M    
21 RP11-5N20 C 21q21~22.1(FHCRC)
chr21 31Mb   M E  
21 RP11-70L17 C 21q21~22.1(FHCRC)
chr21 29Mb   M E  
21 RP11-79G23 C 21q21~22(FHCRC)
chr21 29Mb     E  
21 RP11-98K19 C 21q21~22(FHCRC)
chr21 27Mb   M E  
21 RP11-375O2 R 21q21.1c(NCI)
chr21 19Mb     E  
21 RP11-92A14 R 21q21.1d(NCI)
chr21 18Mb     E  
21 RP11-49B5 R 21q21.1e(NCI)
chr21 20Mb A   E  
21 RP11-97F14 R 21q21.1g(NCI)
chr21 22Mb     E  
21 RP11-32A2 C 21q21.2~21.3(FHCRC)
chr21 29Mb A M    
21 RP11-6I7 C 21q21.2~21.3(FHCRC)
chr21 26Mb   M E  
21 RP11-125H1 C 21q21.3(FHCRC)
chr21 31Mb   M E  
21 RP11-147H1 C 21q21.3(FHCRC)
chr21 32Mb   M E  
21 RP11-276A17 C 21q21.3(FHCRC)
chr21 31Mb   M    
21 RP11-30N6 C 21q21.3(FHCRC)
chr21 29Mb   M E  
21 RP11-83L17 C 21q21.3(FHCRC)
chr21 26Mb   M    
21 RP11-89C22 C 21q21.3(FHCRC)
chr21 25Mb   M E  
21 RP11-90A17 C 21q21.3(FHCRC)
chr21 27Mb     E  
21 RP11-267O12 CR 21q21.3(FHCRC)
21q22.11a(NCI)
chr21 31Mb   M E  
21 RP11-61G3 C 21q21.3~22.11(FHCRC)
chr21 31Mb   M E  
21 CTA-344G6 R 21q21.3~22.1(CSMC)
chr21 33Mb   M E  
21 RP11-115H17 C 21q21.3~22.1(FHCRC)
chr21 27Mb   M E  
21 RP11-30C13 R 21q21.3b(NCI)
chr21 28Mb     E  
21 CTA-238D5 R 21q22.1(CSMC)
chr21 33Mb   M    
21 CTB-13J18 R 21q22.1(CSMC)
chr21 37Mb   M    
21 CTB-5J19 R 21q22.1(CSMC)
chr21 36Mb   M    
21 CTD-2096F11 C 21q22.1(FHCRC)
chr21 33Mb   M    
21 RP11-14B21 C 21q22.1(FHCRC)
chr21 31Mb A M E  
21 RP11-17O20 CR 21q22.1(FHCRC)
21q22.12a(NCI)
chr21 35Mb   M E  
21 RP11-451M12 C 21q22.1(FHCRC)
chr21 35Mb     E  
21 RP11-54F16 C 21q22.1(FHCRC)
chr21 32Mb   M E  
21 RP11-79A12 C 21q22.1(FHCRC)
chr21 34Mb     E  
21 RP11-8P19 CR 21q22.1(FHCRC)
21q22.11c(NCI)
chr21 34Mb   M E  
21 CTA-403C6 R 21q22.1~22.2(CSMC)
chr21 39Mb   M    
21 CTA-601D8 R 21q22.1~22.2(CSMC)
chr21 37Mb   M    
21 CTA-74C2 R 21q22.1~22.2(CSMC)
chr21 37Mb   M    
21 CTB-40N13 R 21q22.1~22.2(CSMC)
chr21 37Mb   M    
21 CTB-40P15 R 21q22.1~22.2(CSMC)
chr21 37Mb   M    
21 CTD-2068F4 R 21q22(UCSF)
           
21 CTD-2162L15 R 21q22(UCSF)
chr21 33Mb     E  
21 CTD-2243I6 R 21q22(UCSF)
           
21 RP11-433E24 C 21q22(FHCRC)
chr21 46Mb     E  
21 RP11-79D9 CR 21q22(FHCRC)
21q22.11b(NCI)
chr21 33Mb     E  
21 RP11-12N9 CR 21q22.13a(NCI)
21q22.2(FHCRC)
chr21 36Mb   M E  
21 RP11-78B20 CR 21q22.13b(NCI)
21q22.2(FHCRC)
chr21 38Mb   M E  
21 CTA-384E5 R 21q22.2(CSMC)
chr21 38Mb   M    
21 CTA-635H5 R 21q22.2(CSMC)
chr21 38Mb   M    
21 RP11-105O24 C 21q22.2(FHCRC)
chr21 37Mb   M E  
21 RP11-143K14 C 21q22.2(FHCRC)
chr5 55Mb   M E  
21 RP11-66C14 CR 21q22.2(FHCRC)
21q22.2a(NCI)
chr21 38Mb   M E  
21 RP11-91H7 21q22.2(FHCRC)
chr21 39Mb     E  
21 RP11-96H21 C 21q22.2(FHCRC)
chr21 30Mb   M E  
21 CTD-2103O7 C 21q22.2~22.3(FHCRC)
chr21 41Mb   M    
21 RP11-114H1 CR 21q22.2~22.3(FHCRC)
21q22.2c(NCI)
chr21 41Mb   M E  
21 RP11-120C17 CR 21q22.2~22.3(FHCRC)
21q22.3a(NCI)
chr21 41Mb   M E  
21 RP11-1P3 C 21q22.2~22.3(FHCRC)
chr21 40Mb   M E  
21 RP11-446L19 C 21q22.2~22.3(FHCRC)
chr21 43Mb A      
21 CTA-340E4 R 21q22.3(CSMC)
chr21 44Mb   M    
21 CTA-346E2 R 21q22.3(CSMC)
chr1 102Mb   M E multiple_placements_on_genome
21 CTA-346E2 R 21q22.3(CSMC)
chr21 44Mb   M E multiple_placements_on_genome
21 RP11-16B19 C 21q22.3(FHCRC)
chr21 44Mb A M E  
21 RP11-190A24 CR 21q22.3(FHCRC)
21q22.3b(NCI)
chr21 44Mb   M E  
21 RP11-549G7 C 21q22.3(FHCRC)
chr21 43Mb A      
21 RP11-88N2 C 21q22.3(FHCRC)
chr21 43Mb     E  
21 RP11-280L8 R 21q22.3d(NCI)
chr21 45Mb     E  
21 RP11-640F21 R 21q22.3e(NCI)
chr21 46Mb     E  
total99C:65 R:49 S:09995 96471 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag
 A, insert sequence
 M, STS marker
 E, BAC-end sequence(s)