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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones


FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
18 CTB-74G18 18pter(UChicago)
chr18 0Mb   M    
18 CTD-2196J5 R 18pter(UCSF)
           
18 RP11-88C10 CR 18p11.32c(FHCRC)
18p11.32c(NCI)
chr18 0Mb   M E  
18 CTA-390E4 R 18p11.32(CSMC)
chr18 2Mb   M    
18 CTA-186D6 R 18p11.32~11.31(CSMC)
chr18 3Mb   M    
18 RP11-324G2 C 18p11.3(FHCRC)
chr18 0Mb A      
18 RP11-694N4 C 18p11.3(FHCRC)
chr18 3Mb A   E  
18 RP11-778P8 C 18p11.3(FHCRC)
chr18 0Mb A   E  
18 RP11-89P6 C 18p11.3(FHCRC)
chr18 5Mb     E  
18 RP11-29P22 C 18p11.2~11.3(FHCRC)
chr18 9Mb A   E  
18 RP11-752I11 C 18p11.2~11.3(FHCRC)
chr18 5Mb A   E  
18 RP11-79O10 C 18p11.2~11.3(FHCRC)
chr18 6Mb     E  
18 RP11-91I8 C 18p11.2~11.3(FHCRC)
chr18 6Mb A   E  
18 CTD-2134I3 R 18p11(UCSF)
chr18 0Mb     E  
18 RP11-78H1 R 18p11.32a~11.32b(NCI)
chr18 2Mb   M E  
18 RP11-55N14 R 18p11.32a(NCI)
chr18 2Mb A M E  
18 RP11-106J7 R 18p11.31e~11.32a(NCI)
chr18 3Mb A M E  
18 RP11-106O1 R 18p11.31e(NCI)
chr18 3Mb   M E  
18 RP11-80L18 C 18p11.31(FHCRC)
chr18 3Mb     E  
18 RP11-88J12 C 18p11.31(FHCRC)
chr18 3Mb     E  
18 CTA-391E4 R 18p11.31~11.2(CSMC)
chr18 0Mb   M    
18 CTA-787F7 R 18p11.31~11.2(CSMC)
      M    
18 RP11-113J12 R 18p11.31d(NCI)
chr18 3Mb   M E  
18 RP11-102E12 R 18p11.31d~11.31c(NCI)
chr18 4Mb   M E  
18 RP11-105C15 R 18p11.31c(NCI)
chr18 5Mb   M E  
18 CTB-9L17 R 18p11.2(CSMC)
chr18 10Mb   M    
18 CTD-2017G14 C 18p11.2(FHCRC)
chr18 9Mb     E  
18 CTD-2048F17 R 18p11.2(UCSF)
           
18 RP11-411B10 C 18p11.2(FHCRC)
chr18 13Mb A      
18 RP11-44O1 C 18p11.2(FHCRC)
chr18 12Mb A   E  
18 RP11-683E17 C 18p11.2(FHCRC)
chr18 8Mb A M   multiple_placements_on_genome
18 RP11-683E17 C 18p11.2(FHCRC)
chr6 31Mb A M   multiple_placements_on_genome
18 RP11-808F20 C 18p11.2(FHCRC)
chr18 13Mb A   E  
18 RP11-720L3 C 18p11.1~11.2(FHCRC)
chr18 13Mb A   E  
18 RP11-102O20 R 18p11.22c(NCI)
chr18 9Mb   M E  
18 RP11-67I20 R 18p11.22b~11.22c(NCI)
chr18 9Mb   M E  
18 RP11-24G5 R 18p11.22b(NCI)
chr18 10Mb   M E  
18 RP11-7E5 R 18p11.22a(NCI)
chr18 10Mb A M E  
18 RP11-151D11 R 18p11.21e(NCI)
chr18 13Mb   M E  
18 RP11-16A21 CR 18p11.21b(FHCRC)
18p11.21b(NCI)
chr18 12Mb   M E  
18 RP11-96I11 R 18p11.21a(NCI)
chr18 12Mb   M E  
18 RP11-90E3 C 18p11.1~18q11.1(FHCRC)
        E  
18 RP11-90G13 C 18p11.1~18q11.1(FHCRC)
        E  
18 RP11-91B23 C 18p11.1~18q11.1(FHCRC)
        E  
18 RP11-91F15 C 18p11.1~18q11.1(FHCRC)
        E  
18 RP11-318O16 S 18cen(SC)
chr20 32Mb     E  
18 RP11-18K7 C 18q11.1~11.2(FHCRC)
chr18 17Mb A   E  
18 RP11-1L4 C 18q11.1~11.2(FHCRC)
chr18 23Mb A   E multiple_placements_on_genome
18 RP11-1L4 C 18q11.1~11.2(FHCRC)
chr3 190Mb A   E multiple_placements_on_genome
18 CTD-2100E13 C 18q11.2(FHCRC)
chr18 19Mb     E  
18 RP11-10L24 C 18q11.2(FHCRC)
chr18 20Mb A   E  
18 RP11-675J9 C 18q11.2(FHCRC)
chr18 37Mb A     multiple_placements_on_genome
18 RP11-675J9 C 18q11.2(FHCRC)
chr18 22Mb A     multiple_placements_on_genome
18 RP11-676D16 R 18q11.2(FHCRC)
chr18 23Mb A   E  
18 RP11-789C17 C 18q11.2(FHCRC)
chr18 8Mb A   E  
18 RP11-799B12 C 18q11.2(FHCRC)
chr18 19Mb A   E  
18 RP11-79F3 C 18q11.2(FHCRC)
chr18 19Mb     E  
18 RP11-90G7 C 18q11.2(FHCRC)
chr18 24Mb     E  
18 RP11-90L7 C 18q11.2(FHCRC)
chr18 21Mb     E  
18 RP11-297N1 C 18q11.2~12(FHCRC)
chr18 24Mb A   E  
18 RP11-349N23 C 18q11.2~12(FHCRC)
chr18 22Mb A M E multiple_placements_on_genome
18 RP11-349N23 C 18q11.2~12(FHCRC)
chrY 57Mb A M E multiple_placements_on_genome
18 RP11-552O4 C 18q11.2~12(FHCRC)
chr18 22Mb A M E  
18 RP11-10G8 R 18q11.2c(NCI)
chr18 17Mb   M E  
18 RP11-59E12 R 18q11.2d(NCI)
chr18 19Mb   M E  
18 RP11-726L11 C 18q12(FHCRC)
chr18 31Mb A   E  
18 RP11-79G13 C 18q12(FHCRC)
chr18 26Mb     E  
18 RP11-79G5 C 18q12(FHCRC)
chr18 31Mb A   E  
18 RP11-90B5 CR 18q12(FHCRC)
18q12.2b~12.2c(NCI)
chr18 32Mb   M E  
18 RP11-94G7 C 18q12(FHCRC)
chr15 26Mb   M E  
18 CTB-16H3 R 18q12~21(CSMC)
chr18 32Mb   M    
18 RP11-159D14 C 18q12~21(FHCRC)
chr18 48Mb     E  
18 RP11-687E1 C 18q12~21(FHCRC)
chr18 37Mb A   E  
18 RP11-747O10 C 18q12~21(FHCRC)
chr18 43Mb A   E  
18 RP11-7O6 C 18q12~21(FHCRC)
chr18 45Mb A   E  
18 RP11-90E1 C 18q12~21(FHCRC)
chr18 39Mb     E  
18 RP11-111H24 R 18q12.1b(NCI)
chr18 23Mb   M E  
18 RP11-19F14 R 18q12.1e(NCI)
chr18 28Mb   M E  
18 RP11-63N12 R 18q12.1g(NCI)
chr18 30Mb   M E  
18 CTB-47K14 R 18q12.2~12.3(CSMC)
chr18 33Mb   M    
18 CTB-4A11 R 18q12.2~12.3(CSMC)
chr18 33Mb   M    
18 CTB-4B12 R 18q12.2~12.3(CSMC)
chr18 33Mb   M    
18 RP11-104N11 R 18q12.2d(NCI)
chr18 33Mb   M E  
18 RP11-20A13 C 18q12.3(FHCRC)
chr18 41Mb A   E  
18 RP11-87H5 C 18q12.3(FHCRC)
chr18 38Mb   M    
18 RP11-89M10 C 18q12.3(FHCRC)
chr18 37Mb     E  
18 RP11-91K12 C 18q12.3~21.1(FHCRC)
chr18 42Mb     E  
18 RP11-265I6 R 18q12.3b(NCI)
chr18 35Mb   M E  
18 RP11-19L3 R 18q21.1a~21.1b(NCI)
chr18 42Mb   M E  
18 CTA-533G4 R 18q21.1(CSMC)
chr18 43Mb   M    
18 RP11-80P2 C 18q21.1(FHCRC)
chr18 44Mb     E  
18 CTB-15N14 R 18q21.1~21.2(CSMC)
chr18 44Mb   M    
18 CTB-45M3 R 18q21.1~21.2(CSMC)
chr18 48Mb   M    
18 CTB-51O16 R 18q21.1~21.2(CSMC)
chr18 47Mb   M    
18 RP11-170E9 C 18q21.1~21.2(FHCRC)
chr9 133Mb   M E  
18 RP11-54A1 C 18q21.1~21.2(FHCRC)
chr18 46Mb A   E  
18 RP11-100M22 C 18q21(FHCRC)
chr20 3Mb A M E multiple_placements_on_genome
18 RP11-100M22 C 18q21(FHCRC)
chr18 46Mb A M E multiple_placements_on_genome
18 RP11-91H23 C 18q21(FHCRC)
        E  
18 RP11-866E20 C 18q21~22(FHCRC)
chr18 55Mb A      
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
18 RP11-20H17 R 18q21.1d~21.1e(NCI)
chr18 44Mb   M E  
18 RP11-43K24 R 18q21.1g(NCI)
chr18 45Mb   M E  
18 CTD-2070A5 C 18q21.2(FHCRC)
chr18 49Mb   M    
18 RP11-186B13 C 18q21.2(FHCRC)
chr18 49Mb A   E  
18 RP11-729G3 C 18q21.2(FHCRC)
chr18 46Mb A   E  
18 RP11-79L5 C 18q21.2(FHCRC)
chr18 53Mb     E  
18 RP11-858M6 C 18q21.2(FHCRC)
chr18 46Mb A      
18 RP11-89B14 C 18q21.2(FHCRC)
chr18 49Mb     E  
18 RP11-160B24 R 18q21.2d(NCI)
chr18 51Mb   M E  
18 RP11-153B11 R 18q21.31a~21.31b(NCI)
chr18 52Mb   M E  
18 RP11-4G8 R 18q21.31~21.32(NCI)
chr18 54Mb   M E  
18 CTA-400C8 R 18q21.3(CSMC)
chr18 59Mb   M    
18 RP11-88J4 C 18q21.3~22(FHCRC)
chr18 56Mb     E  
18 RP11-90B3 C 18q21.3~22(FHCRC)
chr18 60Mb     E  
18 RP11-12J12 R 18q21.32a(NCI)
chr18 55Mb   M E  
18 RP11-40D15 R 18q21.32b~21.32c(NCI)
chr18 56Mb   M E  
18 RP11-15C15 R 18q21.32c~21.33a(NCI)
chr18 57Mb   M E  
18 RP11-75O12 R 18q21.33b(NCI)
chr18 59Mb   M E  
18 RP11-90A21 C 18q22.1(FHCRC)
chr18 59Mb     E  
18 CTB-50P2 R 18q22(CSMC)
chr18 55Mb   M    
18 CTD-2111E18 R 18q22(UCSF)
           
18 RP11-299P2 C 18q22(FHCRC)
chr18 58Mb A M E  
18 RP11-495C15 C 18q22(FHCRC)
chr18 59Mb A      
18 RP11-64C15 C 18q22(FHCRC)
chr18 65Mb     E  
18 RP11-793J2 C 18q22(FHCRC)
chr18 59Mb A   E  
18 RP11-79A24 C 18q22(FHCRC)
chr18 64Mb     E  
18 RP11-88B2 C 18q22(FHCRC)
chr18 61Mb A   E  
18 RP11-89I22 C 18q22(FHCRC)
chr18 60Mb     E  
18 RP11-90A7 C 18q22(FHCRC)
chr18 64Mb A   E  
18 RP11-91H13 C 18q22(FHCRC)
chr18 57Mb     E  
18 RP11-91J23 18q22(FHCRC)
           
18 RP11-304M13 C 18q22~23(FHCRC)
    A M    
18 RP11-504H5 C 18q22~23(FHCRC)
chr18 70Mb A      
18 RP11-3K7 R 18q22.1b~22.1c(NCI)
chr18 61Mb A M E  
18 RP11-105L16 R 18q22.1e~22.1f(NCI)
chr18 64Mb   M E  
18 RP11-49H23 R 18q22.2(NCI)
chr18 64Mb   M E  
18 RP11-57F7 R 18q22.3a~22.3b(NCI)
chr18 66Mb   M E  
18 RP11-89N12 18q22.3(FHCRC)
chr18 69Mb     E  
18 RP11-53N15 R 18q22.3c~22.3d(NCI)
chr18 70Mb   M E  
18 CTB-53L21 R 18q23(CSMC)
chr18 73Mb   M    
18 RP11-196B3 C 18q23(FHCRC)
chr18 75Mb A      
18 RP11-315M18 C 18q23(FHCRC)
chr18 75Mb A   E  
18 RP11-61A18 CR 18q23(FHCRC)
18q23b(NCI)
chr18 72Mb   M E  
18 RP11-89N1 C 18q23(FHCRC)
chr18 75Mb     E  
18 RP11-90L15 C 18q23(FHCRC)
chr18 68Mb     E  
18 RP11-90L3 C 18q23(FHCRC)
chr18 73Mb     E  
18 RP11-91C19 C 18q23(FHCRC)
chr18 75Mb     E  
18 RP11-4B17 R 18q23b~23c(NCI)
chr18 72Mb   M E  
18 RP11-130J1 R 18q23c(NCI)
chr18 73Mb   M E  
18 RP11-7H17 R 18q23c~23d(NCI)
chr18 75Mb   M E  
18 RP11-87C15 R 18q23d(NCI)
chr18 75Mb   M E  
18 CTB-75F20 18qter(UChicago)
           
total147C:82 R:64 S:1147135 4670113 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag
 A, insert sequence
 M, STS marker
 E, BAC-end sequence(s)