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Cytogenetic Resource of FISH-mapped, Sequence-tagged Clones

FISH chr: FISH data source:
Clone distributor:
Sequence tag: Show details on sequence-tag:
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Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
15 RP11-32B5 C 15q11.2~12(FHCRC)
chr15 19Mb AC068446.22      
15 RP11-441B20 C 15q11.2~12(FHCRC)
chr15 22Mb AC080077.3   AQ585663.1 T7,
AQ585662.1 SP6
15 RP11-680F8 C 15q12~13(FHCRC)
chr15 27Mb AC022613.13   AQ464615.1 T7  
15 RP11-115G22 C 15q13(FHCRC)
chr15 30Mb AC111172.1*u SHGC-12902 AQ345456.1 SP6,
AQ345458.1 T7
15 RP11-38E12 C 15q13~14(FHCRC)
chr15 30Mb AC009673.15      
15 RP11-540B6 C 15q13~14(FHCRC)
chr15 28Mb AC073220.3,
15 RP11-414N15 R 15q13.1c~13.2a(NCI)
chr15 29Mb AC130691.1*u RH77828 AZ301255.2 T7,
AZ301256.2 SP6
15 RP11-111A22 R 15q14(FHCRC)
chr15 38Mb AC019054.4,
AC091045.3, AC090876.1*u
  AQ322725.1 SP6,
AQ350839.1*u T7
15 RP11-1I15 C 15q14(FHCRC)
chr15 32Mb AC012272.3   B49601.1 T7,
AQ312709.1 SP6
15 RP11-201P10 C 15q14(FHCRC)
chr15 34Mb AC019016.7   AQ413659.1 T7,
AQ413657.1 SP6
15 RP11-37C7 R 15q14(FHCRC)
chr15 37Mb AC023908.6,
SHGC-31667 AQ030003.1 ,
15 RP11-380D11 R 15q14(FHCRC)
chr15 39Mb AC016134.7,
  AQ551602.1 T7,
AQ551601.1 SP6
15 RP11-3D4 C 15q14(FHCRC)
chr15 31Mb AC010809.10 SHGC-13587 B63353.1 T7,
AQ316839.1 SP6
15 CTD-2006D8 R 15q14~15(FHCRC)
chr15 38Mb AC025429.6   B56189.1 ,
B56190.1 SP6,
AQ222372.1*u SP6,
AQ468589.1*u T7
15 CTD-2339L15 R 15q14~15(FHCRC)
chr15 38Mb AC022405.5   AQ057032.1 SP6,
15 CTD-2559K5 R 15q14~15(FHCRC)
chr15 38Mb AC022086.2   AQ425948.1 SP6,
15 RP11-114F23 R 15q14~15(FHCRC)
chr15 41Mb AC015664.6   AQ347380.1 SP6,
AQ372600.1 T7
15 RP11-133K1 C 15q14~15(FHCRC)
chr15 38Mb AC020658.6,
SHGC-11216 AZ521426.1 SP6,
AQ384379.1*u T7
15 RP11-164J13 R 15q14~15(FHCRC)
chr15 40Mb AC012651.8, AC087759.1*u   AQ379940.1 T7,
AQ379937.1*u SP6
15 RP11-315A19 R 15q14~15(FHCRC)
chr15 41Mb AC011330.8,
RH39570 AZ301311.2 T7,
AQ538490.1 SP6,
AZ301312.2 SP6
15 RP11-325N19 R 15q14~15(FHCRC)
chr15 37Mb AC012377.5,
15 RP11-473C18 C 15q14~15(FHCRC)
chr15 41Mb AC068724.7,
  AQ631463.1 T7,
AQ631462.1 SP6
15 RP11-62L9 C 15q14~15(FHCRC)
chr15 37Mb AC027386.3*d SHGC-9365, SHGC-13045*u AQ194284.1 ,
15 RP11-62L9 C 15q14~15(FHCRC)
chr15 37Mb AC027386.3 SHGC-9365*d, SHGC-13045*u AQ194283.1*d ,
15 RP11-516C1 R 15q14~21.1(FHCRC)
chr15 42Mb AC025043.7, AC087805.1*u      
15 CTD-2129N1 R 15q15(FHCRC)
chr15 38Mb AC025166.7   AQ713878.1 T7,
AQ714222.1 SP6
15 CTD-2165P21 R 15q15(FHCRC)
chr15 42Mb AC025270.6   B91302.1 SP6,
B91299.1 ,
AQ125098.1 T7,
AQ296884.1*u SP6
15 RP11-127C24 C 15q15(FHCRC)
chr15 37Mb AC024707.3, AC090859.1*u      
15 RP11-263I19 R 15q15(FHCRC)
chr15 41Mb AC021754.6,
  AQ482241.1 SP6,
AQ482243.1 T7
15 RP11-265N6 R 15q15(FHCRC)
chr15 40Mb AC018362.8,
  AQ487812.1 SP6  
15 RP11-316F15 R 15q15(FHCRC)
chr10 9Mb AC016160.2*d   AQ506896.1 SP6,
AQ540456.1 T7
15 RP11-316F15 R 15q15(FHCRC)
chr15 38Mb AC016160.2   AQ506896.1*d SP6,
AQ540456.1*d T7
15 RP11-328J12 R 15q15(FHCRC)
chr15 39Mb AC012475.2,
RH44572 AZ301250.2 SP6,
AZ301249.2 T7
15 RP11-329C22 R 15q15(FHCRC)
chr15 41Mb AC023356.8,
15 RP11-355D13 C 15q15(FHCRC)
chr15 41Mb AC018924.9,
  AQ534018.1 SP6  
15 RP11-532F12 R 15q15(FHCRC)
chr15 85Mb AC090908.1, AC012476.8*d     multiple_placements_on_genome
15 RP11-532F12 R 15q15(FHCRC)
chr15 38Mb AC012476.8, AC090908.1*d     multiple_placements_on_genome
15 RP11-546B15 R 15q15(FHCRC)
chr15 40Mb AC022468.5,
15 RP11-78I21 C 15q15(FHCRC)
chr15 41Mb AC019011.7,
  AQ284576.1 T7,
AQ284574.1 SP6
15 CTD-2329K10 R 15q15~21.1(FHCRC)
chr15 42Mb AC025430.5   AQ035175.1 SP6,
15 RP11-134K12 R 15q15~21.1(FHCRC)
chr15 44Mb AC090512.3   AQ387477.1 T7,
AQ344466.1*u SP6
15 RP11-215M5 R 15q15~21.1(FHCRC)
15 RP11-315O8 R 15q15~21.1(FHCRC)
chr15 44Mb AC068714.9,
  AZ520626.1 T7,
AQ504675.1 T7,
AQ504671.1 SP6
15 RP11-154J22 CR 15q15~21(FHCRC)
chr15 46Mb AC023355.5,
AA489219 AQ387108.1 SP6,
AQ387111.1 T7
15 RP11-16O9 CR 15q15~21(FHCRC)
chr15 39Mb AC087721.4 AI365420 B75525.1 SP6,
B75526.1 T7
15 RP11-292P13 C 15q15~21(FHCRC)
chr15 42Mb AC018901.8,
15 RP11-296A16 CR 15q15~21(FHCRC)
chr15 41Mb AC018512.6,
15 RP11-402F9 R 15q15.2a~15.2b(NCI)
chr15 41Mb AC009852.9,
RH74787 AZ301789.2 T7,
AZ301790.2 SP6
15 RP11-552E10 R 15q21.1a~21.1b(NCI)
chr15 45Mb AC012050.7,
RH79183 AZ301329.2 T7,
AZ301330.2 SP6
15 CTD-2050N2 R 15q21.1(FHCRC)
chr15 45Mb AC023905.6   AQ774192.1 T7,
AQ783527.1 SP6
15 CTD-2120M24 R 15q21.1(FHCRC)
chr15 48Mb AC022403.4,
  AQ667403.1 SP6,
AQ572243.1 T7
15 CTD-2556B7 R 15q21.1(FHCRC)
chr15 45Mb AC025167.6   AQ425634.1 ,
AQ392780.1 SP6
15 CTD-3110H11 R 15q21.1(FHCRC)
chr15 48Mb AC022087.8   AQ145494.1 SP6,
AQ140419.1 T7
15 RP11-138P11 R 15q21.1(FHCRC)
chr15 46Mb AC009697.3   AQ384819.1 SP6,
AQ384822.1 T7
15 RP11-142J21 R 15q21.1(FHCRC)
chr15 45Mb AC009558.14   AQ386534.1 SP6,
AQ386546.1 T7
15 RP11-27P20 R 15q21.1(FHCRC)
chr15 42Mb AC009821.3 SHGC-13414 B87164.1 T7,
B89376.1*u SP6
15 RP11-295H24 R 15q21.1(FHCRC)
chr15 47Mb AC022306.6,
15 RP11-348A14 C 15q21.1(FHCRC)
chr15 46Mb AC084758.3   AQ527698.1 T7,
AQ527695.1 SP6
15 RP11-485O10 R 15q21.1(FHCRC)
chr15 46Mb AC012379.7,
15 RP11-519G16 R 15q21.1(FHCRC)
chr15 43Mb AC025580.8,
15 RP11-6L16 CR 15q21.1(FHCRC)
chr15 44Mb AC068716.8,
SHGC-18125 B49488.1 T7  
15 RP11-81G13 R 15q21.1(FHCRC)
chr15 44Mb AC012405.5   AQ321714.1 T7,
AQ284957.1 SP6
15 RP11-90J19 C 15q21.1(FHCRC)
chr15 45Mb AC066615.7, AC091269.1*u   AQ284375.1 SP6,
AZ518545.1 T7,
AQ284377.1 T7
15 RP11-294O11 R 15q21.1(FHCRC)
chr15 48Mb AC009851.6,
RH54318 AZ301781.2 T7,
AZ301782.2 SP6
15 RP11-325E5 R 15q21.1~21.2(FHCRC)
chr15 47Mb AC013452.9,
15 RP11-57J20 C 15q21.1~21.2(FHCRC)
chr15 49Mb AC138905.1*u SHGC-10061, SHGC-34077 AQ194971.1 ,
15 CTD-2384C14 R 15q21(FHCRC)
chr15 49Mb AC044789.2*u   AQ310132.1 ,
AQ310133.1 SP6
15 RP11-100A21 R 15q21(FHCRC)
chr15 55Mb AC023907.2,
  AQ320208.1 SP6,
AQ320210.1 T7
15 RP11-291H24 CR 15q21(FHCRC)
chr15 53Mb AC009997.7, AC090746.2*u      
15 RP11-313P18 R 15q21(FHCRC)
chr15 47Mb AC020892.7,
  AQ538048.1*d T7 multiple_placements_on_genome
15 RP11-313P18 R 15q21(FHCRC)
chr15 49Mb AC020892.7*d,
  AQ538048.1 T7 multiple_placements_on_genome
15 RP11-337B11 R 15q21(FHCRC)
chr15 50Mb AC018903.2      
15 RP11-353B9 R 15q21(FHCRC)
chr15 47Mb AC018927.6, AC090766.2*u   AQ533973.1 T7,
AQ533672.1 SP6
15 RP11-416K5 R 15q21(FHCRC)
chr15 48Mb AC009753.5,
  AQ550044.1 T7  
15 RP11-521C20 R 15q21(FHCRC)
chr15 38Mb AC021755.9,
15 RP11-522G20 CR 15q21(FHCRC)
chr15 49Mb AC012169.8, AC087760.1*u      
15 RP11-547D13 C 15q21(FHCRC)
chr15 53Mb AC011912.7,
15 RP11-548M13 C 15q21(FHCRC)
chr15 53Mb AC025272.6      
15 RP11-80G8 R 15q21(FHCRC)
chr15 51Mb AC066614.8, AC090748.2*u SHGC-2205 AZ520808.1 T7,
AQ282268.1 SP6
15 RP11-358M11 CR 15q21~22(FHCRC)
chr15 55Mb AC016525.11   AQ540975.1 SP6,
AQ540976.1 T7
15 RP11-50C13 R 15q21~22(FHCRC)
chr15 56Mb AC018904.6, AC021303.4*u   AQ116353.1 ,
15 RP11-65B16 C 15q21~22(FHCRC)
chr15 66Mb AC067837.6   AQ237326.1 T7,
AQ237323.1 SP6
15 RP11-90A19 C 15q21~22(FHCRC)
chr15 59Mb AC079068.11   AQ281398.1 T7,
AQ281396.1 SP6
15 RP11-99L18 C 15q21~22(FHCRC)
chr15 57Mb AC091748.3 SHGC-311 AQ319243.1 T7,
AQ319241.1 SP6
15 CTD-2019H15 R 15q21.2(FHCRC)
chr15 52Mb AC022302.7   AQ772937.1*u SP6  
15 CTD-2647E9 R 15q21.2(FHCRC)
chr15 47Mb AC025040.7   AQ628430.1 SP6  
15 RP11-105D1 R 15q21.2(FHCRC)
chr15 48Mb AC022407.6   AQ318269.1 T7,
AQ318266.1 SP6
15 RP11-23N2 R 15q21.2(FHCRC)
chr15 50Mb AC025917.8,
  AQ013902.1 ,
AQ013904.1 ,
B86521.1*u SP6
15 RP11-316P21 R 15q21.2(FHCRC)
chr15 50Mb AC025041.7   AQ507707.1 SP6  
15 RP11-327C2 R 15q21.2(FHCRC)
chr15 50Mb AC018902.8,
15 RP11-562A8 R 15q21.2(FHCRC)
chr15 48Mb AC012170.6,
15 RP11-430B1 R 15q21.2~21.3(FHCRC)
chr15 50Mb AC010674.11,
15 RP11-507J18 R 15q21.2~21.3(FHCRC)
chr15 48Mb AC012100.7, AC090728.2*u      
15 CTD-2025L16 R 15q21.3(FHCRC)
chr15 51Mb AC022303.2   B81373.1 ,
B80930.1 SP6,
AQ828556.1*u SP6
15 CTD-2184D3 R 15q21.3(FHCRC)
chr15 50Mb AC023906.7   AQ030704.1 T7  
15 CTD-2280O8 R 15q21.3(FHCRC)
chr15 56Mb AC022465.5   AQ008486.1 SP6,
15 CTD-2323M6 R 15q21.3(FHCRC)
chr15 55Mb AC025916.5,
  AQ026984.1 SP6,
15 CTD-2330J20 R 15q21.3(FHCRC)
chr15 56Mb AC025431.7   AQ034577.1 SP6,
15 CTD-3247H4 R 15q21.3(FHCRC)
chr15 46Mb AC022467.7,
  AQ223864.1 T7,
AQ220797.1 SP6
15 RP11-139H15 R 15q21.3(FHCRC)
chr15 53Mb AC018926.10, AC091032.1*u   AQ383575.1 SP6,
AQ349303.1*u T7
Chr clone name Distributor1 FISH Placement on genome2 Placement summary3 Insert sequence4 STS4 BAC-ends4 Flag
15 RP11-178D12 R 15q21.3(FHCRC)
chr15 53Mb AC013355.7, AC090745.2*u      
15 RP11-209K10 R 15q21.3(FHCRC)
chr15 50Mb AC016044.11, AC090862.3*u   AQ420180.1 SP6,
AQ420181.1 T7
15 RP11-215J7 R 15q21.3(FHCRC)
chr15 52Mb AC009559.8 SHGC-14929    
15 RP11-232J12 R 15q21.3(FHCRC)
chr15 51Mb AC024061.7, AC090931.1*u      
15 RP11-274F13 R 15q21.3(FHCRC)
chr15 50Mb AC012474.2      
15 RP11-313H3 R 15q21.3(FHCRC)
chr15 56Mb AC025918.7,
  AQ506292.1 SP6,
AQ528042.1 T7
15 RP11-323F24 R 15q21.3(FHCRC)
chr15 54Mb AC010999.6 RH36930 AQ544228.1 SP6,
AZ301784.2 SP6,
AZ301783.2 T7
15 RP11-355N15 R 15q21.3(FHCRC)
chr15 56Mb AC084781.2   AQ534391.1 SP6  
15 RP11-361D15 C 15q21.3(FHCRC)
chr15 57Mb AC092755.4, AC087523.1*u   AQ542076.1*u SP6,
AQ542078.1*u T7
15 RP11-390M11 R 15q21.3(FHCRC)
chr15 52Mb AC010867.8,
15 RP11-521C23 R 15q21.3(FHCRC)
chr15 55Mb AC016971.6,
15 RP11-566D24 R 15q21.3(FHCRC)
chr15 54Mb AC090518.2      
15 RP11-5N19 R 15q21.3(FHCRC)
chr15 54Mb AC084783.2   B49306.1 T7  
15 RP11-61K4 C 15q21.3(FHCRC)
chr15 53Mb AC009799.5 SHGC-10979 AQ194236.1 ,
15 RP11-86K22 R 15q21.3(FHCRC)
chr15 55Mb AC012653.8   AQ283936.1 SP6  
15 RP11-93I17 R 15q21.3(FHCRC)
chr15 56Mb AC016050.4 SHGC-717 AQ321746.1 SP6  
15 RP11-44G18 R 15q21.3~22.1(FHCRC)
chr15 55Mb AC015579.3   AQ201756.1 ,
15 RP11-30K9 CR 15q21.3~22(FHCRC)
chr15 56Mb AC019299.4,
SHGC-10546 B85205.1 SP6,
B85206.1 T7
15 RP11-460A24 R 15q21.3b~21.3c(NCI)
chr15 53Mb AC016527.2 RH65629 AZ301264.2 SP6,
AZ301263.2 T7
15 RP11-349H15 C 15q22(FHCRC)
chr15 63Mb AC068507.2   AQ527731.1 SP6,
AQ527734.1 T7
15 RP11-537K8 C 15q22(FHCRC)
chr15 62Mb AC017098.2,
AC124793.2, AC090601.3*u
15 RP11-67N18 C 15q22(FHCRC)
chr15 63Mb AC015714.6 N25550 AZ519018.1 T7,
15 RP11-91E13 C 15q22(FHCRC)
chr15 61Mb AC009685.3*u SHGC-13744 AQ281309.1 T7,
AQ281306.1 SP6
15 RP11-100A11 C 15q22~23(FHCRC)
chr15 64Mb AC090461.4 AA007518 AQ320176.1 T7,
AQ320174.1 SP6
15 RP11-34F13 C 15q22~23(FHCRC)
chr15 65Mb AC009292.11 SHGC-34905, AA250966 AQ046404.1  
15 RP11-344A16 R 15q22.2(FHCRC)
chr15 55Mb AC090651.3 RH54291 AQ540343.1 T7,
AQ540341.1 SP6
15 RP11-69G7 C 15q22.2(FHCRC)
chr15 61Mb AC087612.6 AA490777 AQ267625.1 T7,
AQ267623.1 SP6
15 RP11-106M3 C 15q23(FHCRC)
chr15 70Mb AC009690.17 SHGC-34981 AQ315234.1 SP6  
15 RP11-29N12 C 15q23(FHCRC)
chr15 69Mb AC016385.4*u   AQ003170.1 SP6,
B87626.1 T7
15 RP11-2I17 C 15q23(FHCRC)
chr15 70Mb AC020779.10 SHGC-2187 B48560.1 SP6,
B48561.1 T7
15 RP11-368G21 C 15q23(FHCRC)
chr15 67Mb AC018949.4*u   AQ543720.1 T7,
AQ543719.1 SP6
15 RP11-424J10 C 15q23(FHCRC)
chr15 71Mb AC009660.15      
15 RP11-492D5 C 15q23(FHCRC)
chr15 71Mb AC022889.8 AA447658    
15 RP11-60L3 C 15q23(FHCRC)
chr15 72Mb AC023300.19      
15 RP11-64K10 C 15q23(FHCRC)
chr15 68Mb AC010076.5,
SHGC-13439 AQ237001.1 SP6,
AQ237002.1 T7
15 RP11-79J21 C 15q24(FHCRC)
chr15 74Mb AC024059.2,
  AQ284316.1 T7,
AQ284315.1 SP6
15 RP11-762M18 C 15q24~25(FHCRC)
chr15 74Mb AC066607.2,
15 RP11-91J9 C 15q24~25(FHCRC)
chr15 75Mb AC104567.1*u   AQ283536.1 T7,
AQ283533.1 SP6
15 RP11-119O22 C 15q25(FHCRC)
chr15 78Mb AC012337.8 R07897 AQ351088.1 T7,
AQ351086.1 SP6
15 RP11-152F13 C 15q25(FHCRC)
chr15 80Mb AC010724.6   AQ384499.1 SP6,
AQ384500.1 T7
15 RP11-282P15 C 15q25(FHCRC)
chr15 77Mb AC010672.6,
  AQ505812.1 T7  
15 RP11-285A1 C 15q25(FHCRC)
chr15 76Mb AC015557.6,
15 RP11-429B14 C 15q25(FHCRC)
chr15 87Mb AC013391.12      
15 RP11-535P8 C 15q25(FHCRC)
chr15 83Mb AC023140.4,
15 RP11-565O12 C 15q25(FHCRC)
chr15 82Mb AC016771.5,
15 RP11-60P2 C 15q25(FHCRC)
chr15 85Mb AC105120.1 SHGC-2186 AQ199900.1 ,
15 RP11-81A1 C 15q25(FHCRC)
chr15 77Mb AC015871.7 SHGC-35552 AQ319872.1 T7,
AQ284225.1 SP6
15 RP11-81L17 C 15q25(FHCRC)
chr15 82Mb AC015715.4 SHGC-30592 AZ516047.1 T7,
AQ281859.1 T7,
AQ281857.1 SP6,
AZ516045.1 SP6
15 RP11-90B9 C 15q25(FHCRC)
chr15 81Mb AC022558.9, AC022175.1*u   AZ517977.1 T7,
AQ283519.1 T7,
AQ283516.1 SP6
15 RP11-528N4 C 15q25~26.1(FHCRC)
chr15 88Mb AC013281.5,
15 RP11-80J8 C 15q25~26.1(FHCRC)
chr15 85Mb AC105122.1*u   AQ317761.1 SP6,
AQ284116.1 T7
15 RP11-285I14 C 15q25~26(FHCRC)
chr15 86Mb AC011966.7      
15 RP11-345O16 C 15q26.1(FHCRC)
chr15 89Mb AC012198.3*u   AQ539369.1 SP6,
AQ539370.1 T7
15 RP11-79A7 C 15q26.1(FHCRC)
chr15 90Mb AC116167.2*u   AQ282177.1 T7,
AZ520662.1 SP6,
AQ282175.1 SP6
15 RP11-304N14 R 15q26.1d(NCI)
chr15 90Mb AC020563.8,
RH47406 AZ301309.2 T7,
15 RP11-405A15 C 15q26.2(FHCRC)
chr15 89Mb AC067986.24 RH54255    
15 RP11-44A22 C 15q26.2(FHCRC)
    AC015572.8*u SHGC-2203*u AQ201515.1*u ,
15 RP11-57P19 C 15q26.2(FHCRC)
chr15 92Mb AC009432.7 SHGC-15361 AQ116082.1 ,
15 RP11-66B24 C 15q26.2(FHCRC)
chr15 99Mb AC015712.10 AA455235 AQ196025.1  
15 RP11-654A16 C 15q26.2~26.3(FHCRC)
chr15 97Mb AC069029.9      
15 RP11-90E5 C 15q26.2~26.3(FHCRC)
chr15 98Mb AC022710.10   AQ281493.1 SP6,
AQ281496.1 T7
total157C:74 R:91 S:0157155 15746111 

1 Distributor: C, Children's hospical Oakland research institute; R, Research Genetics; S, Sanger Center

2 Placement of clones on the genome. Only clones that are localiized to one or two places on the same chromosome on the draft sequence are included

3 Placement summary indicates sequences used for clone placement.
   BAC-end sequence aligned in the plus orientation
   BAC-end sequence aligned in the minus orientation
   insert sequence
   STS aligned
   insert sequence has clone end information.

4 Sequence-tag

  *d indicates sequences that disagree with placement on the genome.

  *u indicates seqeunces that didn't align to the genome or were not used for annotation because the clone was placed to multiple locations on the human genome.