Genome

Ziziphus jujuba (common jujube) fruit bearing tree Lineage: Eukaryota[11633]; Viridiplantae[1269]; Streptophyta[1171]; Embryophyta[1162]; Tracheophyta[1148]; Spermatophyta[1132]; Magnoliopsida[1107]; eudicotyledons[882]; Gunneridae[882]; Pentapetalae[882]; rosids[557]; fabids[307]; Rosales[66]; Rhamnaceae[3]; Paliureae[1]; Ziziphus[1]; Ziziphus jujuba[1]

Ziziphus jujube, jujube, belongs to the family Rhamnaceae. It bears nutritious fruits which are drupes or are dry. It is cultivated over vast areas of the world. Trees show wide range of morphology ranging from small deciduous to shrubs. Fruit is green turning into yellow or sometimes red at maturity.

Summary Sequence data:  genome assemblies: 3; sequence reads: 1  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 405.637  median protein count: 42095  median GC%: 33.084 NCBI Annotation Release:  102 Publications (limited to 20 most recent records) Chromosome-Scale Genome Assembly for Chinese Sour Jujube and Insights Into Its Genome Evolution and Domestication Signature. Shen LY, et al. Front Plant Sci 2021 The complex jujube genome provides insights into fruit tree biology. Liu MJ, et al. Nat Commun 2014 Oct 28  Representative (genome information for reference and representative genomes) Reference genome:   Ziziphus jujuba var. spinosa Submitter: Ori-Gene Co. Ltd. Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Chr 1 NC_063287.1 CM036890.1 50.33 33.0 5,405 2 48 901 3,851 283 Chr 2 NC_063288.1 CM036891.1 29.15 33.1 3,358 - 39 531 2,501 190 Chr 3 NC_063289.1 CM036892.1 30.3 33.1 3,300 8 28 698 2,423 177 Chr 4 NC_063290.1 CM036893.1 33.28 32.9 3,368 - 35 553 2,469 204 Chr 5 NC_063291.1 CM036894.1 33.8 33.1 3,286 21 23 796 2,426 240 Chr 6 NC_063292.1 CM036895.1 30.28 32.7 3,647 - 37 602 2,419 126 Chr 7 NC_063293.1 CM036896.1 34.54 32.8 2,852 - 12 650 2,103 179 Chr 8 NC_063294.1 CM036897.1 27.69 33.0 3,342 3 49 427 2,363 143 Chr 9 NC_063295.1 CM036898.1 29.89 32.9 3,629 - 47 671 2,625 197 Chr 10 NC_063296.1 CM036899.1 27.04 32.9 2,747 1 31 457 2,002 185 Chr 11 NC_063297.1 CM036900.1 27.51 32.7 2,550 1 40 471 2,009 166 Chr 12 NC_063298.1 CM036901.1 26.5 33.2 3,329 1 48 470 2,450 252 MT - CM036902.1 0.37 45.3 42 - - - 42 - Pltd - CM036903.1 0.16 36.8 3 - - - 3 - Un - . - 25.32 34.9 1,237 74 51 234 1,506 424 Chromosomes Click on chromosome name to open Genome Data Viewer