Genome

Prunus mume (Japanese apricot) Prunus mume Organism overview Lineage: Eukaryota[13250]; Viridiplantae[1438]; Streptophyta[1337]; Embryophyta[1328]; Tracheophyta[1310]; Spermatophyta[1294]; Magnoliopsida[1271]; eudicotyledons[1027]; Gunneridae[1027]; Pentapetalae[1027]; rosids[647]; fabids[369]; Rosales[72]; Rosaceae[49]; Amygdaloideae[27]; Amygdaleae[13]; Prunus[13]; Prunus mume[1]

Prunus mume, domesticated in China more than 3,000 years ago as the important fruit and ornamental plant. Though the common names are 'Chinese plum' and 'Japanese apricot', it is more closely related to the apricot. The tree starts flowering in mid-winter, the fruits ripen in early summer.

Summary Submitter: BGI Assembly level:  Chromosome Assembly: GCA_000346735.1 P.mume_V1.0 scaffolds: 8,626 contigs: 23,761 N50: 32,259 L50: 1,964 BioProjects: PRJNA246160 Whole Genome Shotgun (WGS):  INSDC: AOHF00000000.1 Statistics:  total length (Mb): 234.03  protein count: 29705  GC%: 38.327 NCBI Annotation Release:  101 Publications (limited to 20 most recent records) The chromosome-level genome provides insight into the molecular mechanism underlying the tortuous-branch phenotype of Prunus mume. Zheng T, et al. New Phytol 2022 Jul Identification and characterization of CYP79D16 and CYP71AN24 catalyzing the first and second steps in L-phenylalanine-derived cyanogenic glycoside biosynthesis in the Japanese apricot, Prunus mume Sieb. et Zucc. Yamaguchi T, et al. Plant Mol Biol 2014 Sep The genome of Prunus mume. Zhang Q, et al. Nat Commun 2012 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res 1997 Mar 1 More... Replicon Info Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene group LG1 NC_024126.1 CM001826.1 26.75 38.1 3,577 - 72 281 3,171 180 group LG2 NC_024127.1 CM001827.1 42.09 38.1 5,674 - 72 439 4,939 234 group LG3 NC_024128.1 CM001828.1 24.36 38.3 2,959 - 42 241 2,655 183 group LG4 NC_024129.1 CM001829.1 23.93 38.1 3,317 - 44 277 2,907 167 group LG5 NC_024130.1 CM001830.1 26.13 38.2 3,470 - 44 299 3,023 176 group LG6 NC_024131.1 CM001831.1 21.29 38.2 2,787 - 37 301 2,549 167 group LG7 NC_024132.1 CM001832.1 17.04 38.2 2,369 - 41 197 2,122 105 group LG8 NC_024133.1 CM001833.1 17.25 38.1 2,544 - 29 208 2,187 114 Pltd NC_023798.1 - 0.16 36.7 84 8 37 - 132 3 Un - . - 35.02 39.3 2,924 - 55 378 2,837 167 Chromosomes Click on chromosome name to open Genome Data Viewer