Coffea arabica (coffee)
Representative genome: Coffea arabica (assembly Cara_1.0)
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BLAST against Coffea arabica genome, protein

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ID: 77
Organism ImageCoffea arabica (coffee)

Coffea arabica is the oldest and most cultivated species of coffee plant.

Lineage: Eukaryota[4304]; Viridiplantae[476]; Streptophyta[413]; Embryophyta[410]; Tracheophyta[406]; Spermatophyta[403]; Magnoliopsida[395]; eudicotyledons[307]; Gunneridae[307]; Pentapetalae[307]; asterids[89]; lamiids[66]; Gentianales[7]; Rubiaceae[3]; Ixoroideae[3]; Gardenieae complex[3]; Bertiereae - Coffeeae clade[3]; Coffeeae[3]; Coffea[3]; Coffea arabica[1]
Coffee, one of the world's largest traded commodities, comes from evergreen coffee trees. Coffea arabica is the earliest cultivated species of coffee and is still most widely grown. It is an allotetraploid with 11 sets of chromosomes (2n=4x=44). Linkage map has been developed for diploid species, C. canephora an economically important More...

Summary

Submitter: Johns Hopkins University
Assembly level: Chromosome
Assembly: GCA_003713225.1 Cara_1.0 scaffolds: 2,833 contigs: 3,523 N50: 3,917,557 L50: 70
BioProjects: PRJNA506972, PRJNA497895
Whole Genome Shotgun (WGS): INSDC: RHJU00000000.1
Statistics: total length (Mb): 1094.45
 protein count: 67222
 GC%: 36.9585
NCBI Annotation Release:  100

Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
Chr1cNC_039898.1CM011106.150.6436.92,5602476602,647495
Chr1eNC_039899.1CM011107.148.7636.93,716-607012,811180
Chr2cNC_039900.1CM011108.166.1636.45,899-619124,480310
Chr2eNC_039901.1CM011109.171.6336.76,341-728794,709234
Chr3cNC_039902.1CM011110.141.5736.32,804-124992,255146
Chr3eNC_039903.1CM011111.137.2736.42,322-124681,953144
Chr4cNC_039904.1CM011112.141.7936.92,385-243871,973170
Chr4eNC_039905.1CM011113.142.5136.82,827-394932,325122
Chr5eNC_039906.1CM011115.139.4436.92,406-164782,013155
Chr5cNC_039907.1CM011114.145.936.82,587-234832,225184
Chr6cNC_039908.1CM011116.155.1836.63,6831346972,904209
Chr6eNC_039909.1CM011117.152.2436.93,6401365372,927216
Chr7cNC_039910.1CM011118.138.8536.73,078-504972,420148
Chr7eNC_039911.1CM011119.135.3936.42,689-514712,114104
Chr8eNC_039912.1CM011121.145.1236.62,871-265032,333147
Chr8cNC_039913.1CM011120.139.0136.32,536-254292,174200
Chr9cNC_039914.1CM011122.138.0637.11,788372851,456120
Chr9eNC_039915.1CM011123.135.8437.11,7341553491,472110
Chr10eNC_039916.1CM011103.140.4636.72,597-274162,104133
Chr10cNC_039917.1CM011102.145.4336.92,356-214411,936154
Chr11cNC_039918.1CM011104.136.2236.52,4608244152,002160
Chr11eNC_039919.1CM011105.142.4736.92,4753195072,026136
PltdNC_008535.1-0.1637.485845-1402
Un-.-104.3739.31,3838122791,375158

Chromosomes

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