Genome

Arabis alpina (gray rockcress) Arabis alpina overview Lineage: Eukaryota[13882]; Viridiplantae[1513]; Streptophyta[1404]; Embryophyta[1395]; Tracheophyta[1377]; Spermatophyta[1360]; Magnoliopsida[1335]; eudicotyledons[1079]; Gunneridae[1079]; Pentapetalae[1079]; rosids[673]; malvids[268]; Brassicales[96]; Brassicaceae[92]; Arabideae[5]; Arabis[4]; Arabis alpina[1]

Arabis alpina, also called alpine rock-cress, is a diploid plant of Brassicaceae family, closely related to the model plant Arabidopsis thaliana. It is an emerging model organism, because of its perennial life cycle. Since it is self-compatible and genetically transformable, mutagenized populations and inbred homozygous lines can be produced.

Summary Sequence data:  genome assemblies: 4; sequence reads: 1  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 308.033  median protein count: 23286  median GC%: 37.401 Publications (limited to 20 most recent records) Development of an Arabis alpina genomic contig sequence data set and application to single nucleotide polymorphisms discovery. Lobréaux S, et al. Mol Ecol Resour 2014 Mar Complete Arabis alpina chloroplast genome sequence and insight into its polymorphism. Melodelima C, et al. Meta Gene 2013 Dec  Representative (genome information for reference and representative genomes) Reference genome:   Arabis alpina MPIPZ.v5 Loc Type Name RefSeq INSDC Size (Mb) GC% Chr 1 - LT669788.1 29.72 36.8 Chr 2 - LT669789.1 36.6 37.6 Chr 3 - LT669790.1 30.42 36.9 Chr 4 - LT669791.1 52.76 37.8 Chr 5 - LT669792.1 28.38 36.8 Chr 6 - LT669793.1 33.39 37.3 Chr 7 - LT669794.1 50.58 37.9 Chr 8 - LT669795.1 49.8 37.4 Chromosomes