Sus scrofa (ID 84) - Genome - NCBI

Warning: The NCBI web site requires JavaScript to function. more...

Sus scrofa
Download sequences in FASTA format for genome, transcript, protein
Download genome annotation in GFF, GenBank or tabular format
BLAST against Sus scrofa genome, transcript, protein
All 32 genomes for species:
Browse the list
Download sequence and annotation from RefSeq or GenBank

Display Settings:

Overview

Format

Summary

Send to:

Choose Destination

File
Clipboard
Collections

Organism Overview ; Genome Assembly and Annotation report

Sus scrofa (pig)

Reference genome sequence

Lineage: Eukaryota[14796]; Metazoa[7378]; Chordata[3431]; Craniata[3398]; Vertebrata[3398]; Euteleostomi[3359]; Mammalia[861]; Eutheria[687]; Laurasiatheria[334]; Artiodactyla[151]; Suina[4]; Suidae[3]; Sus[2]; Sus scrofa[1]

Summary

Submitter:

The Swine Genome Sequencing Consortium (SGSC)

Assembly level:

Chromosome

Assembly:

GCA_000003025.6 Sscrofa11.1 scaffolds: 706 contigs: 1,118 N50: 48,231,277 L50: 15

BioProjects:

PRJNA28993, PRJNA13421

Whole Genome Shotgun (WGS):

INSDC: AEMK00000000.2

Statistics:

total length (Mb): 2501.91

protein count: 63577

GC%: 41.971

Publications (limited to 20 most recent records)

An improved pig reference genome sequence to enable pig genetics and genomics research. Warr A, et al. Gigascience 2020 Jun 1
Analyses of pig genomes provide insight into porcine demography and evolution. Groenen MA, et al. Nature 2012 Nov 15
PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res 2007 Jan
Pigs in sequence space: a 0.66X coverage pig genome survey based on shotgun sequencing. Wernersson R, et al. BMC Genomics 2005 May 10
PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res 2004 Jan 1
Complete nucleotide sequence of pig (Sus scrofa) mitochondrial genome and dating evolutionary divergence within Artiodactyla. Lin CS, et al. Gene 1999 Aug 5

Replicon Info

Loc	Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
	Chr	1	NC_010443.5	CM000812.5	274.33	40.2	5,392	-	21	1,255	2,423	260

	Chr	2	NC_010444.4	CM000813.5	151.94	42.5	5,641	-	29	988	2,683	257

	Chr	3	NC_010445.4	CM000814.5	132.85	44.2	4,054	-	36	941	1,805	109

	Chr	4	NC_010446.5	CM000815.5	130.91	41.6	3,628	-	70	868	1,650	104

	Chr	5	NC_010447.5	CM000816.5	104.53	42.2	3,219	-	12	653	1,458	103

	Chr	6	NC_010448.4	CM000817.5	170.84	44.7	6,262	-	16	1,282	2,724	167

	Chr	7	NC_010449.5	CM000818.5	121.84	43.1	3,720	-	143	889	1,978	133

	Chr	8	NC_010450.4	CM000819.5	138.97	39.5	2,216	-	2	644	1,096	109

	Chr	9	NC_010451.4	CM000820.5	139.51	41.2	3,659	-	8	893	1,715	169

	Chr	10	NC_010452.4	CM000821.5	69.36	42.7	1,455	-	5	428	664	54

	Chr	11	NC_010453.5	CM000822.5	79.17	40.6	1,156	-	5	406	559	43

	Chr	12	NC_010454.4	CM000823.5	61.6	47.7	3,151	-	44	708	1,468	58

	Chr	13	NC_010455.5	CM000824.5	208.34	39.9	4,724	-	4	918	1,841	200

	Chr	14	NC_010456.5	CM000825.5	141.76	43.2	4,088	-	11	811	1,667	132

	Chr	15	NC_010457.5	CM000826.5	140.41	39.9	2,727	-	7	561	1,106	115

	Chr	16	NC_010458.4	CM000827.5	79.94	40.3	940	-	5	390	588	50

	Chr	17	NC_010459.5	CM000828.5	63.49	44.7	1,823	-	5	459	821	46

	Chr	18	NC_010460.4	CM000829.5	55.98	43.1	1,368	-	17	400	659	41

	Chr	X	NC_010461.5	CM000830.5	125.94	40.4	2,482	-	8	523	1,172	170

	Chr	Y	NC_010462.3	LT634572.1	43.55	47.5	118	-	-	57	147	45

		MT	NC_000845.1	-	0.02	39.5	13	2	22	-	37	-

	Un	-	.	-	66.63	43.3	1,741	2	62	446	2,127	719

Chromosomes

Click on chromosome name to open Genome Data Viewer

Genome Region

Sus scrofa mitochondrion, complete genome	Go to nucleotide:Graphics FASTA GenBank

Supplemental Content

NCBI Resources

Genome Data Viewer
Genome Data Viewer

Related information

Assembly
Related Assembly records
BioProject
Related BioProjects
Gene
Related Gene
Components
Constituent nucleotide sequence
Protein
Constituent protein sequence
PubMed
PubMed articles cited by genome record
Taxonomy
Taxonomy sequences associated with genome record

Recent activity

Clear Turn Off Turn On

Sus scrofa
Sus scrofa

Genome
PRJNA612400 (12)
SRA
Guidelines for the Care and Use of Mammals in Neuroscience and Behavioral Resear...
Guidelines for the Care and Use of Mammals in Neuroscience and Behavioral Research
Alzheimer Disease - StatPearls
Alzheimer Disease - StatPearls
TRPV Channels’ Function in Osmo- and Mechanotransduction - TRP Ion Channel Funct...
TRPV Channels’ Function in Osmo- and Mechanotransduction - TRP Ion Channel Function in Sensory Transduction and Cellular Signaling Cascades

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

You are here: NCBI > Genomes & Maps > Genome