Xenopus laevis (African clawed frog)
Representative genome: Xenopus laevis (assembly Xenopus_laevis_v2)
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ID: 81
Organism ImageXenopus laevis (African clawed frog)

African clawed frog (Xenopus laevis) is an important model organism for cell and developmental biology.

Lineage: Eukaryota[3869]; Metazoa[1310]; Chordata[677]; Craniata[667]; Vertebrata[667]; Euteleostomi[658]; Amphibia[6]; Batrachia[6]; Anura[5]; Pipoidea[2]; Pipidae[2]; Xenopodinae[2]; Xenopus[2]; Xenopus[1]; Xenopus laevis[1]
The tetraploid Xenopus laevis is native to Africa. X. laevis used to study vertebrate biology and early embryonic development and as a model for biomedical research. Xenopus studies have been instrumental in the elucidation of biochemical processes such as intracellular signaling, cytoskeletal assembly, and chromosome replication. More...

Summary

Submitter: International Xenopus Sequencing Consortium
Assembly level: Chromosome
Environment: OptimumTemperature: C
Assembly: GCA_001663975.1 Xenopus_laevis_v2 scaffolds: 108,033 contigs: 324,061 N50: 19,713 L50: 36,507
BioProjects: PRJNA338693, PRJNA313213
Whole Genome Shotgun (WGS): INSDC: LYTH00000000.1
Statistics: total length (Mb): 2718.43
 protein count: 56817
 GC%: 40.2325
NCBI Annotation Release:  100

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Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene
Chr1LNC_030724.1CM004466.1219.839.74,496-162772,72859
Chr1SNC_030725.1CM004467.1179.9539.82,949-122341,869100
Chr2LNC_030726.1CM004468.1181.1539.93,737-152652,27773
Chr2SNC_030727.1CM004469.1159.7340.03,016-341831,94880
Chr3LNC_030728.1CM004470.1144.1739.93,775-3451942,71782
Chr3SNC_030729.1CM004471.1120.4839.92,525-331661,55770
Chr4LNC_030730.1CM004472.1144.0940.13,265-1092582,09346
Chr4SNC_030731.1CM004473.1121.2540.32,527-711641,55050
Chr5LNC_030732.1CM004474.1159.3640.02,874-432081,82552
Chr5SNC_030733.1CM004475.1136.5740.22,083-351591,37374
Chr6LNC_030734.1CM004476.1155.0139.82,649-102161,60943
Chr6SNC_030735.1CM004477.1128.3640.11,843-71411,16571
Chr7LNC_030736.1CM004478.1126.8240.32,853-241881,80552
Chr7SNC_030737.1CM004479.189.6540.61,852-151171,16050
Chr8LNC_030738.1CM004480.1120.140.33,568-212732,24858
Chr8SNC_030739.1CM004481.198.9341.12,417-421601,54861
Chr9_10LNC_030740.1CM004482.1117.8340.73,716-752232,26661
Chr9_10SNC_030741.1CM004483.1104.5640.82,681-571981,77890
MTNC_001573.1-0.0237.013222-13-
Un-.-210.5941.53,978-1863713,247107

Chromosomes

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