Felis catus (ID 78) - Genome

Felis catus (domestic cat)
Reference genome: Felis catus (assembly F.catus_Fca126_mat1.0)
Download sequences in FASTA format for genome, transcript, protein
Download genome annotation in GFF, GenBank or tabular format
BLAST against Felis catus genome, transcript, protein
All 5 genomes for species:
Browse the list

Try NCBI Datasets - a new way to download genome sequence and annotation we're testing in NCBI Labs

Display Settings:

Overview

Format

Summary

Send to:

Choose Destination

File
Clipboard
Collections

ID: 78

Organism Overview ; Genome Assembly and Annotation report [5] ; Organelle Annotation Report [1]

Felis catus (domestic cat)

domestic cat

Lineage: Eukaryota[8697]; Metazoa[4225]; Chordata[2098]; Craniata[2075]; Vertebrata[2075]; Euteleostomi[2058]; Mammalia[637]; Eutheria[463]; Laurasiatheria[263]; Carnivora[68]; Feliformia[25]; Felidae[17]; Felinae[12]; Felis[3]; Felis catus[1]

Felis catus, the domestic cat, provides several valuable models for infectious disease, including a model for human AIDS. With a large number of recognized breeds, the cat is also a valuable resource for studying phenotypic diversity and evolution. The cat genome will further facilitate research in human medicine as some rare diseases that occur More...

Summary

Sequence data:

genome assemblies: 5; sequence reads: 3

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 2493.14

median protein count: 71463

median GC%: 41.8806

NCBI Annotation Release:

105

Publications (limited to 20 most recent records)

Ultracontinuous Single Haplotype Genome Assemblies for the Domestic Cat (Felis catus) and Asian Leopard Cat (Prionailurus bengalensis). Bredemeyer KR, et al. J Hered 2021 Mar 29
Genomic architecture constrained placental mammal X Chromosome evolution. Brashear WA, et al. Genome Res 2021 Aug
A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism. Buckley RM, et al. PLoS Genet 2020 Oct
Initial sequence and comparative analysis of the cat genome. Pontius JU, et al. Genome Res 2007 Nov
Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome. Lopez JV, et al. Genomics 1996 Apr 15

More...

Representative (genome information for reference and representative genomes)

Reference genome:

Felis catus F.catus_Fca126_mat1.0

Submitter: Texas A&M University

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	A1	NC_058368.1	CM031412.1	239.37	39.9	4,556	-	34	2,329	2,869	308

Chr	A2	NC_058369.1	CM031413.1	169.39	42.4	5,908	-	46	2,038	2,952	203

Chr	A3	NC_058370.1	CM031414.1	140.44	43.0	4,120	-	17	1,602	2,199	155

Chr	B1	NC_058371.1	CM031415.1	205.37	39.2	3,901	-	14	1,734	2,258	299

Chr	B2	NC_058372.1	CM031416.1	151.96	40.3	3,672	-	171	1,606	2,403	255

Chr	B3	NC_058373.1	CM031417.1	148.49	42.0	4,478	-	47	2,103	2,716	264

Chr	B4	NC_058374.1	CM031418.1	142.17	41.5	4,538	1	24	1,553	2,411	262

Chr	C1	NC_058375.1	CM031419.1	221.61	41.6	6,858	-	66	2,440	3,568	343

Chr	C2	NC_058376.1	CM031420.1	158.58	39.8	3,549	-	21	1,563	2,024	247

Chr	D1	NC_058377.1	CM031421.1	115.37	42.7	4,389	-	27	1,375	2,456	183

Chr	D2	NC_058378.1	CM031422.1	88.08	43.5	2,686	28	9	1,039	1,375	118

Chr	D3	NC_058379.1	CM031423.1	94.44	43.4	2,837	-	23	1,199	1,446	118

Chr	D4	NC_058380.1	CM031424.1	95.15	43.0	3,098	1	14	1,116	1,568	127

Chr	E1	NC_058381.1	CM031425.1	61.88	47.3	3,630	11	54	1,111	1,855	82

Chr	E2	NC_058382.1	CM031426.1	61.99	46.2	3,853	-	21	1,056	1,800	126

Chr	E3	NC_058383.1	CM031427.1	41.44	48.4	2,401	-	33	687	1,153	35

Chr	F1	NC_058384.1	CM031428.1	69.24	42.9	2,519	-	69	1,020	1,369	86

Chr	F2	NC_058385.1	CM031429.1	83.47	40.8	1,607	1	16	957	1,067	122

Chr	X	NC_058386.1	CM031411.1	127.84	40.8	2,551	-	28	784	1,537	260

	MT	NC_001700.1	-	0.02	40.3	13	2	22	-	37	-

Un	-	.	-	9.46	49.5	299	-	7	418	244	27

Chromosomes

Click on chromosome name to open Genome Data Viewer

External Resources

Supplemental Content

NCBI Resources

Genome Data Viewer
Genome Data Viewer

Tools

BLAST Genome
BLAST Genome

Related information

Assembly
Related Assembly records
BioProject
Related BioProjects
Gene
Related Gene
Components
Constituent nucleotide sequence
Protein
Constituent protein sequence
PubMed
PubMed articles cited by genome record
Taxonomy
Taxonomy sequences associated with genome record

Recent activity

Clear Turn Off Turn On

Felis catus
Felis catus

Genome

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

Genome

Display Settings:

Send to:

Summary

Publications (limited to 20 most recent records)

Representative (genome information for reference and representative genomes)

Chromosomes

External Resources

Supplemental Content

NCBI Resources

Tools

Related information

Recent activity

Simple NCBI Directory

Getting Started

Resources

Popular

Featured

NCBI Information