Mycobacterium shimoidei (ID 46013) - Genome - NCBI

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Mycobacterium shimoidei
Representative genome: Mycobacterium shimoidei
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ID: 46013

Organism Overview ; Genome Assembly and Annotation report [4]

Mycobacterium shimoidei

Lineage: Bacteria[35943]; Actinomycetota[4651]; Actinomycetes[4243]; Mycobacteriales[704]; Mycobacteriaceae[248]; Mycobacterium[117]; Mycobacterium shimoidei[1]

Summary

Sequence data:

genome assemblies: 4

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 4.72088

median protein count: 4405

median GC%: 65.8

Publications (limited to 20 most recent records)

Comparative genome analysis of mycobacteria focusing on tRNA and non-coding RNA. Behra PRK, et al. BMC Genomics 2022 Oct 15
In Vivo Generation of BK and JC Polyomavirus Defective Viral Genomes in Human Urine Samples Associated with Higher Viral Loads. Addetia A, et al. J Virol 2021 May 24
Viral Genetics Modulate Orolabial Herpes Simplex Virus Type 1 Shedding in Humans. Ramchandani MS, et al. J Infect Dis 2019 Mar 15
Mycobacterium talmoniae, a Potential Pulmonary Pathogen Isolated from Multiple Patients with Bronchiectasis in the United States, Including the First Case of Clinical Disease in a Patient with Cystic Fibrosis. Vasireddy R, et al. J Clin Microbiol 2019 Feb
Prospective, Real-time Metagenomic Sequencing During Norovirus Outbreak Reveals Discrete Transmission Clusters. Casto AM, et al. Clin Infect Dis 2019 Aug 30
VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank. Shean RC, et al. BMC Bioinformatics 2019 Jan 23
Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6. Greninger AL, et al. BMC Genomics 2018 Mar 20
Heterogeneous Antimicrobial Susceptibility Characteristics in Pseudomonas aeruginosa Isolates from Cystic Fibrosis Patients. Qin X, et al. mSphere 2018 Mar-Apr
The human clone ST22 SCCmec IV methicillin-resistant Staphylococcus aureus isolated from swine herds and wild primates in Nepal: is man the common source? Roberts MC, et al. FEMS Microbiol Ecol 2018 May 1
Ultrasensitive Capture of Human Herpes Simplex Virus Genomes Directly from Clinical Samples Reveals Extraordinarily Limited Evolution in Cell Culture. Greninger AL, et al. mSphere 2018 Jun 27
Viral Entry Properties Required for Fitness in Humans Are Lost through Rapid Genomic Change during Viral Isolation. Iketani S, et al. mBio 2018 Jul 3
Limited Marginal Utility of Deep Sequencing for HIV Drug Resistance Testing in the Age of Integrase Inhibitors. Dalmat RR, et al. J Clin Microbiol 2018 Dec
Worldwide circulation of HSV-2 × HSV-1 recombinant strains. Koelle DM, et al. Sci Rep 2017 Mar 13
Genomic characterization of Nontuberculous Mycobacteria. Fedrizzi T, et al. Sci Rep 2017 Mar 27
Rule-Out Outbreak: 24-Hour Metagenomic Next-Generation Sequencing for Characterizing Respiratory Virus Source for Infection Prevention. Greninger AL, et al. J Pediatric Infect Dis Soc 2017 Jun 1
Highly conserved intragenic HSV-2 sequences: Results from next-generation sequencing of HSV-2 U_L and U_S regions from genital swabs collected from 3 continents. Johnston C, et al. Virology 2017 Oct
Prolonged Shedding of Human Coronavirus in Hematopoietic Cell Transplant Recipients: Risk Factors and Viral Genome Evolution. Ogimi C, et al. J Infect Dis 2017 Jul 15
Isolation and characterization of the fall Chinook aquareovirus. Makhsous N, et al. Virol J 2017 Sep 5
Conservation and Recombination in the Genome Sequence of Haemophilus influenzae Type f WAPHL1. Bateman AC, et al. Genome Announc 2017 Sep 21
Dual-strain genital herpes simplex virus type 2 (HSV-2) infection in the US, Peru, and 8 countries in sub-Saharan Africa: A nested cross-sectional viral genotyping study. Johnston C, et al. PLoS Med 2017 Dec

Representative (genome information for reference and representative genomes)

Reference genome:

Mycobacterium shimoidei PRJEB26812

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Un	-	.	-	4.84	65.8	4,522	7	45	3	4,695	118

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