Genome

Callithrix jacchus (white-tufted-ear marmoset) white-tufted-ear marmoset Lineage: Eukaryota[10856]; Metazoa[5115]; Chordata[2487]; Craniata[2464]; Vertebrata[2464]; Euteleostomi[2443]; Mammalia[687]; Eutheria[513]; Euarchontoglires[207]; Primates[82]; Haplorrhini[60]; Platyrrhini[13]; Cebidae[7]; Callitrichinae[3]; Callithrix[1]; Callithrix[1]; Callithrix jacchus[1]

The common or white-tufted-ear marmoset Callithrix jacchus is a New World primate that inhabits the coastal rainforests of eastern Brazil. Its genome sequence will be useful for comparative genomics studies of primates. The C. jacchus genome is distributed over 22 pairs of autosomes and two sex chromosomes.

Summary Sequence data:  genome assemblies: 11; sequence reads: 2  (See  Genome Assembly and Annotation report) Statistics:  median total length (Mb): 2810.53  median protein count: 85133  median GC%: 40.9 NCBI Annotation Release:  105 Publications (limited to 20 most recent records) Evolutionary and biomedical insights from a marmoset diploid genome assembly. Yang C, et al. Nature 2021 Jun Towards complete and error-free genome assemblies of all vertebrate species. Rhie A, et al. Nature 2021 Apr An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased mapping rates of sequence data. Jayakumar V, et al. BMC Genomics 2020 Apr 2 The complete mitochondrial genome of white-tufted-ear marmoset, Callithrix jacchus (Primates: Callitrichinae). Wang W, et al. Mitochondrial DNA A DNA Mapp Seq Anal 2016 May Resequencing of the common marmoset genome improves genome assemblies and gene-coding sequence analysis. Sato K, et al. Sci Rep 2015 Nov 20 Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators. Bellott DW, et al. Nature 2014 Apr 24 The common marmoset genome provides insight into primate biology and evolution. Marmoset Genome Sequencing and Analysis Consortium. Nat Genet 2014 Aug More...  Representative (genome information for reference and representative genomes) Reference genome:   Callithrix jacchus Callithrix_jacchus_cj1700_1.1 Submitter: McDonnell Genome Institute at Washington University Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene Pseudogene Chr 1 NC_048383.1 CM018917.1 217.96 41.4 6,700 4 3 1,843 3,284 714 Chr Y NC_048406.1 CM023155.1 8.23 42.5 146 - - 62 109 31 Chr 2 NC_048384.1 CM018918.1 204.49 40.4 4,429 3 6 1,314 2,496 565 Chr 3 NC_048385.1 CM018919.1 191.91 38.4 3,384 2 1 1,101 1,888 440 Chr 4 NC_048386.1 CM018920.1 174.04 39.9 4,265 2 113 1,300 2,473 499 Chr 5 NC_048387.1 CM018921.1 164.35 44.2 7,437 3 34 1,717 3,484 578 Chr 6 NC_048388.1 CM018922.1 161 40.3 4,088 - 7 1,177 2,033 406 Chr 7 NC_048389.1 CM018923.1 157.55 42.2 5,770 2 5 1,505 2,577 475 Chr 8 NC_048390.1 CM018924.1 126.85 39.6 2,823 - 14 829 1,518 296 Chr 9 NC_048391.1 CM018925.1 134.04 41.0 4,488 2 10 1,047 2,173 474 Chr 10 NC_048392.1 CM018926.1 137.67 41.4 4,647 1 27 1,178 2,269 411 Chr 11 NC_048393.1 CM018927.1 129.69 41.8 5,237 - 10 1,028 2,370 370 Chr 12 NC_048394.1 CM018928.1 124.49 43.0 4,553 3 16 984 1,961 340 Chr 13 NC_048395.1 CM018929.1 118.94 40.6 2,419 1 - 884 1,321 286 Chr 14 NC_048396.1 CM018930.1 112.09 41.0 2,824 3 4 850 1,582 355 Chr 15 NC_048397.1 CM018931.1 99.2 41.2 3,585 2 1 785 1,423 264 Chr 16 NC_048398.1 CM018932.1 97.82 39.8 1,905 - 5 588 987 198 Chr 17 NC_048399.1 CM018933.1 74.94 39.4 1,783 - 4 645 919 207 Chr 18 NC_048400.1 CM018934.1 47.03 41.3 2,043 - 64 505 1,105 189 Chr 19 NC_048401.1 CM018935.1 51.57 42.2 1,568 11 5 477 825 164 Chr 20 NC_048402.1 CM018936.1 45.62 43.9 1,591 - 8 386 693 103 Chr 21 NC_048403.1 CM018937.1 51.26 39.7 841 - - 279 518 92 Chr 22 NC_048404.1 CM018938.1 51.3 49.0 5,094 1 8 684 1,918 201 Chr X NC_048405.1 CM018939.1 148.17 39.4 2,995 2 7 507 1,684 461 MT NC_025586.1 - 0.02 40.3 13 2 22 - 13 - Un - . - 67.61 37.1 505 - 7 423 671 255 Chromosomes Click on chromosome name to open Genome Data Viewer External Resources GOLD Marmoset BAC library Marmoset Cytogenetics Marmoset Sequencing White Paper NISC Comparative Vertebrate Sequencing Online Mendelian Inheritance in Animals