Pongo abelii (ID 325) - Genome

Pongo abelii (Sumatran orangutan)
Representative genome: Pongo abelii (assembly Susie_PABv2)
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ID: 325

Organism Overview ; Genome Assembly and Annotation report [4] ; Organelle Annotation Report [1]

Pongo abelii (Sumatran orangutan)

Sumatran orangutan; useful in studies of hominoid chromosome evolution

Lineage: Eukaryota[6688]; Metazoa[2841]; Chordata[1686]; Craniata[1665]; Vertebrata[1665]; Euteleostomi[1649]; Mammalia[450]; Eutheria[426]; Euarchontoglires[162]; Primates[60]; Haplorrhini[41]; Catarrhini[29]; Hominidae[6]; Pongo[2]; Pongo abelii[1]

The two former subspecies of orangutan, Bornean Pongo pygmaeus pygmaeus and Sumatran P. pygmaeus abelii, have recently been promoted to distinct Sumatran (P. abelii) and Bornean (P. pygmaeus) orangutan species. Orangutans are critically endangered primates whose populations have decreased nearly ninety percent in the past More...

Summary

Sequence data:

genome assemblies: 4; sequence reads: 1

(See Genome Assembly and Annotation report)

Statistics:

median total length (Mb): 3253.14

median protein count: 49721

median GC%: 41.1801

NCBI Annotation Release:

103

Publications (limited to 20 most recent records)

Dynamic evolution of great ape Y chromosomes. Cechova M, et al. Proc Natl Acad Sci U S A 2020 Oct 20
A mitogenomic phylogeny of living primates. Finstermeier K, et al. PLoS One 2013
Comparative and demographic analysis of orang-utan genomes. Locke DP, et al. Nature 2011 Jan 27
Chimpanzee and human Y chromosomes are remarkably divergent in structure and gene content. Hughes JF, et al. Nature 2010 Jan 28
Molecular evolution of TEPP protein genes in metazoans. Hahn Y Biochem Genet 2009 Oct
Initial sequence of the chimpanzee genome and comparison with the human genome. Chimpanzee Sequencing and Analysis Consortium. Nature 2005 Sep 1
Conservation of Y-linked genes during human evolution revealed by comparative sequencing in chimpanzee. Hughes JF, et al. Nature 2005 Sep 1
TEPP, a new gene specifically expressed in testis, prostate, and placenta and well conserved in chordates. Bera TK, et al. Biochem Biophys Res Commun 2003 Dec 26
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res 1997 Mar 1
A complete sequence of the mitochondrial genome of the western lowland gorilla. Xu X, et al. Mol Biol Evol 1996 May
The mitochondrial DNA molecule of Sumatran orangutan and a molecular proposal for two (Bornean and Sumatran) species of orangutan. Xu X, et al. J Mol Evol 1996 Nov
Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Horai S, et al. Proc Natl Acad Sci U S A 1995 Jan 17
Man's place in Hominoidea revealed by mitochondrial DNA genealogy. Horai S, et al. J Mol Evol 1992 Jul
Comparisons of ape and human sequences that regulate mitochondrial DNA transcription and D-loop DNA synthesis. Foran DR, et al. Nucleic Acids Res 1988 Jul 11
A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: sequence, structure, evolution, and phylogenetic implications. Hixson JE, et al. Mol Biol Evol 1986 Jan

More...

Representative (genome information for reference and representative genomes)

Reference genome:

Pongo abelii Susie_PABv2

Submitter: Orangutan Genome Sequencing Consortium

Type	Name	RefSeq	INSDC	Size (Mb)	GC%	Protein	rRNA	tRNA	Other RNA	Gene	Pseudogene
Chr	1	NC_036903.1	CM009262.2	227.91	41.6	5,054	1	69	823	3,426	685

Chr	2A	NC_036904.1	CM009263.2	109.51	41.0	1,628	1	5	354	1,162	227

Chr	2B	NC_036905.1	CM009264.2	129.94	39.5	1,800	-	4	320	1,128	261

Chr	3	NC_036906.1	CM009265.2	193.66	39.5	2,792	1	4	476	1,823	407

Chr	4	NC_036907.1	CM009266.2	189.39	38.2	1,921	-	1	426	1,431	343

Chr	5	NC_036908.1	CM009267.2	179.19	39.4	2,048	-	21	412	1,565	365

Chr	6	NC_036909.1	CM009268.2	169.5	39.6	2,567	1	133	490	1,995	445

Chr	7	NC_036910.1	CM009269.2	145.41	40.2	2,054	-	19	367	1,524	337

Chr	8	NC_036911.1	CM009270.2	144.04	40.0	1,821	-	6	302	1,198	291

Chr	9	NC_036912.1	CM009271.2	112.21	41.4	1,965	-	3	280	1,280	273

Chr	10	NC_036913.1	CM009272.2	132.18	41.5	2,204	-	3	364	1,306	285

Chr	11	NC_036914.1	CM009273.2	128.12	41.6	2,987	-	14	364	1,876	327

Chr	12	NC_036915.1	CM009274.2	132.18	40.8	2,690	-	9	418	1,710	352

Chr	13	NC_036916.1	CM009275.2	98.48	38.6	885	-	4	243	678	154

Chr	14	NC_036917.1	CM009276.2	88.96	40.8	1,623	-	22	307	1,177	244

Chr	15	NC_036918.1	CM009277.2	82.55	42.3	1,455	-	8	385	1,166	258

Chr	16	NC_036919.1	CM009278.2	68.24	44.7	1,831	-	29	241	1,127	165

Chr	17	NC_036920.1	CM009279.2	75.91	45.6	2,596	-	33	338	1,642	224

Chr	18	NC_036921.1	CM009280.2	75.92	39.8	724	-	1	189	562	140

Chr	19	NC_036922.1	CM009281.2	57.58	48.1	3,275	-	9	225	1,844	253

Chr	20	NC_036923.1	CM009282.2	60.84	44.0	1,302	-	-	212	824	126

Chr	21	NC_036924.1	CM009283.2	34.68	40.9	536	-	1	125	405	84

Chr	22	NC_036925.1	CM009284.2	35.31	47.8	1,047	-	-	144	716	134

Chr	X	NC_036926.1	CM009285.2	151.24	39.3	1,922	-	4	320	1,484	450

	MT	NC_002083.1	-	0.02	45.9	13	2	22	-	13	-

Un	-	.	-	242.09	41.6	981	8	14	337	1,284	494

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