| Sequence data: | genome assemblies: 10; sequence reads: 7 | (See Genome Assembly and Annotation report) | | | Statistics: | median total length (Mb): 2971.33 | | median protein count: 42830 | | median GC%: 41.0424 | | NCBI Annotation Release: | 103 |
- Slow Delivery Immunization Enhances HIV Neutralizing Antibody and Germinal Center Responses via Modulation of Immunodominance. Cirelli KM, et al. Cell 2019 May 16
- Analysis of immunoglobulin transcripts and hypermutation following SHIV(AD8) infection and protein-plus-adjuvant immunization. Francica JR, et al. Nat Commun 2015 Apr 10
- Full-length novel MHC class I allele discovery by next-generation sequencing: two platforms are better than one. Dudley DM, et al. Immunogenetics 2014 Jan
- Single-cell and deep sequencing of IgG-switched macaque B cells reveal a diverse Ig repertoire following immunization. Sundling C, et al. J Immunol 2014 Apr 15
- A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct 2014 Oct 14
- Mamu-B genes and their allelic repertoires in different populations of Chinese-origin rhesus macaques. Liu Y, et al. Immunogenetics 2013 Apr
- Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes. Hughes JF, et al. Nature 2012 Feb 22
- Preliminary observations of MHC class I A region polymorphism in three populations of Chinese-origin rhesus macaques. Li A, et al. Immunogenetics 2012 Dec
- Characterization of killer immunoglobulin-like receptor genetics and comprehensive genotyping by pyrosequencing in rhesus macaques. Moreland AJ, et al. BMC Genomics 2011 Jun 7
- Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol 2011 Oct 16
- Diversity of MHC class I genes in Burmese-origin rhesus macaques. Naruse TK, et al. Immunogenetics 2010 Sep
- Decreased NK cell frequency and function is associated with increased risk of KIR3DL allele polymorphism in simian immunodeficiency virus-infected rhesus macaques with high viral loads. Bostik P, et al. J Immunol 2009 Mar 15
- The major histocompatibility complex class II alleles Mamu-DRB1*1003 and -DRB1*0306 are enriched in a cohort of simian immunodeficiency virus-infected rhesus macaque elite controllers. Giraldo-Vela JP, et al. J Virol 2008 Jan
- Identification of MHC class I sequences in Chinese-origin rhesus macaques. Karl JA, et al. Immunogenetics 2008 Jan
- A snapshot of the Mamu-B genes and their allelic repertoire in rhesus macaques of Chinese origin. Otting N, et al. Immunogenetics 2008 Sep
- Evolutionary and biomedical insights from the rhesus macaque genome. Rhesus Macaque Genome Sequencing and Analysis Consortium., et al. Science 2007 Apr 13
- Rapid evolution of major histocompatibility complex class I genes in primates generates new disease alleles in humans via hitchhiking diversity. Shiina T, et al. Genetics 2006 Jul
- Unparalleled complexity of the MHC class I region in rhesus macaques. Otting N, et al. Proc Natl Acad Sci U S A 2005 Feb 1
- Genomic evolution of MHC class I region in primates. Fukami-Kobayashi K, et al. Proc Natl Acad Sci U S A 2005 Jun 28
- Rhesus macaque class I duplicon structures, organization, and evolution within the alpha block of the major histocompatibility complex. Kulski JK, et al. Mol Biol Evol 2004 Nov
- Molecular analyses of mtDNA deletion mutations in microdissected skeletal muscle fibers from aged rhesus monkeys. Gokey NG, et al. Aging Cell 2004 Oct
- Selective expression of NKG2-A and NKG2-C mRNAs and novel alternative splicing of 5' exons in rhesus monkey decidua. Kravitz RH, et al. Immunogenetics 2001 Feb
- tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res 1997 Mar 1
More...
Reference genome:  
Macaca mulatta Mmul_10|
Loc
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Type
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Name
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RefSeq
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INSDC
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Size (Mb)
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GC%
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Protein
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rRNA
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tRNA
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Other RNA
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Gene
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Pseudogene
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| | master WGS | - | QNVO00000000.2 | 2,925.72 | 41.0 | - | - | - | - | - | - | | | Chr | 1 | NC_041754.1 | CM014336.1 | 223.62 | 41.9 | 6,799 | 16 | 99 | 1,693 | 3,932 | 705 | | | Chr | 2 | NC_041755.1 | CM014337.1 | 196.2 | 39.8 | 4,105 | - | 6 | 1,092 | 2,200 | 407 | | | Chr | 3 | NC_041756.1 | CM014338.1 | 185.29 | 40.8 | 3,836 | - | 17 | 1,282 | 2,435 | 431 | | | Chr | 4 | NC_041757.1 | CM014339.1 | 169.96 | 39.7 | 3,315 | - | 142 | 1,057 | 2,320 | 450 | | | Chr | 5 | NC_041758.1 | CM014340.1 | 187.32 | 38.3 | 2,681 | - | 2 | 924 | 1,714 | 329 | | | Chr | 6 | NC_041759.1 | CM014341.1 | 179.09 | 39.7 | 2,802 | - | 17 | 1,078 | 1,946 | 373 | | | Chr | 7 | NC_041760.1 | CM014342.1 | 169.87 | 41.6 | 4,319 | - | 29 | 1,661 | 2,804 | 480 | | | Chr | 8 | NC_041761.1 | CM014343.1 | 145.68 | 40.3 | 2,485 | - | 6 | 789 | 1,504 | 266 | | | Chr | 9 | NC_041762.1 | CM014344.1 | 134.12 | 41.8 | 3,156 | - | 2 | 857 | 1,587 | 288 | | | Chr | 10 | NC_041763.1 | CM014345.1 | 99.52 | 45.7 | 3,374 | - | - | 902 | 1,834 | 229 | | | Chr | 11 | NC_041764.1 | CM014346.1 | 133.07 | 41.1 | 3,621 | - | 9 | 921 | 2,014 | 345 | | | Chr | 12 | NC_041765.1 | CM014347.1 | 130.04 | 39.8 | 2,469 | - | 4 | 756 | 1,404 | 280 | | | Chr | 13 | NC_041766.1 | CM014348.1 | 108.74 | 41.2 | 2,300 | - | 4 | 707 | 1,332 | 211 | | | Chr | 14 | NC_041767.1 | CM014349.1 | 128.06 | 41.8 | 4,203 | - | 12 | 884 | 2,202 | 314 | | | Chr | 15 | NC_041768.1 | CM014350.1 | 113.28 | 41.8 | 2,697 | - | 4 | 729 | 1,466 | 242 | | | Chr | 16 | NC_041769.1 | CM014351.1 | 79.63 | 45.8 | 3,537 | 1 | 31 | 789 | 1,880 | 223 | | | Chr | 17 | NC_041770.1 | CM014352.1 | 95.43 | 38.7 | 1,208 | - | 4 | 531 | 845 | 152 | | | Chr | 18 | NC_041771.1 | CM014353.1 | 74.47 | 40.1 | 1,159 | 1 | - | 459 | 715 | 119 | | | Chr | 19 | NC_041772.1 | CM014354.1 | 58.32 | 48.4 | 4,137 | - | 7 | 685 | 1,963 | 201 | | | Chr | 20 | NC_041773.1 | CM014355.1 | 77.14 | 44.8 | 2,578 | 3 | 27 | 556 | 1,363 | 150 | | | Chr | X | NC_041774.1 | CM014356.1 | 153.39 | 39.5 | 2,511 | 1 | 6 | 719 | 1,743 | 480 | | | Chr | Y | - | CM003438.1 | 11.75 | 40.1 | - | - | - | - | - | - | | | | MT | NC_005943.1 | - | 0.02 | 43.2 | 13 | 2 | 22 | - | 13 | - | | | Un | - | . | - | 117.34 | 41.9 | 554 | - | 2 | 242 | 568 | 111 | |
Click on chromosome name to open Genome Data Viewer |