Rattus rattus (black rat)
Representative genome: Rattus rattus (assembly Rrattus_CSIRO_v1)
Download sequences in FASTA format for genome, transcript, protein
Download genome annotation in GFF, GenBank or tabular format
BLAST against Rattus rattus genome, protein
All 2 genomes for species:
Browse the list
Download sequence and annotation from RefSeq or GenBank
Try NCBI Datasets - a new way to download genome sequence and annotation we're testing in NCBI Labs

Display Settings:

Format

Send to:

Choose Destination
ID: 13128
Rattus rattus (black rat)

Rattus rattus overview

Lineage: Eukaryota[5064]; Metazoa[1886]; Chordata[1005]; Craniata[988]; Vertebrata[988]; Euteleostomi[976]; Mammalia[398]; Eutheria[389]; Euarchontoglires[155]; Glires[92]; Rodentia[88]; Myomorpha[45]; Muroidea[42]; Muridae[16]; Murinae[12]; Rattus[2]; Rattus rattus[1]

Summary

Submitter: CSIRO
Assembly level: Chromosome
Assembly: GCA_011064425.1 Rrattus_CSIRO_v1 scaffolds: 2,173 contigs: 7,847 N50: 1,635,336 L50: 371
BioProjects: PRJNA612505
Whole Genome Shotgun (WGS): INSDC: JAAIVD000000000.1
Statistics: total length (Mb): 2382.79
 protein count: 13
 GC%: 42.1324
NCBI Annotation Release:  100

Replicon Info

Loc Type Name RefSeq INSDC Size (Mb) GC% Protein rRNA tRNA Other RNA Gene
Chr1-CM021548.1272.9542.5-----
Chr2-CM021549.1230.2543.0-----
Chr3-CM021550.1223.3940.5-----
Chr4-CM021551.1182.8341.5-----
Chr5-CM021552.1158.8242.5-----
Chr6-CM021553.1159.5841.7-----
Chr7-CM021554.1130.8441.9-----
Chr8-CM021555.1115.3343.3-----
Chr9-CM021556.196.7145.2-----
Chr10-CM021557.194.9841.6-----
Chr11-CM021558.198.6141.4-----
Chr12-CM021559.194.0941.2-----
Chr13-CM021560.178.8241.9-----
Chr14-CM021561.181.9942.7-----
Chr15-CM021562.179.3241.8-----
Chr16-CM021563.144.4347.6-----
Chr17-CM021564.148.544.4-----
Chr18-CM021565.149.8543.7-----
ChrX-CM021566.1130.3739.0-----
ChrY-CM021567.12.2938.3-----
-NC_012374.1-0.0238.113222-13
Un-.-8.8240.4-----

Chromosomes

Click on chromosome name to open Genome Data Viewer

Supplemental Content

NCBI Resources

Tools

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center