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    betaTrCP beta-transducin repeat-containing homologue protein [ Ciona intestinalis (vase tunicate) ]

    Gene ID: 445628, updated on 28-Oct-2019

    Summary

    Gene symbol
    betaTrCP
    Gene description
    beta-transducin repeat-containing homologue protein
    See related
    Ensembl:ENSCING00000009295
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ciona intestinalis
    Lineage
    Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona

    Genomic context

    See betaTrCP in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    104 current KH (GCF_000224145.3) 5 NC_020170.2 (2913318..2927252)

    Chromosome 5 - NC_020170.2Genomic Context describing neighboring genes Neighboring gene major vault protein Neighboring gene alpha-adducin Neighboring gene Fanconi anemia group I protein-like Neighboring gene prefoldin subunit 3 Neighboring gene 39S ribosomal protein L41-B, mitochondrial

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_020170.2 Chromosome 5 Reference KH Primary Assembly

    Pathways from BioSystems

    • SCF-BTRC complex, organism-specific biosystem (from KEGG)
      SCF-BTRC complex, organism-specific biosystemStructural complex; Genetic information processing; Ubiquitin system
    • SCF-BTRC complex, conserved biosystem (from KEGG)
      SCF-BTRC complex, conserved biosystemStructural complex; Genetic information processing; Ubiquitin system
    • Ubiquitin mediated proteolysis, organism-specific biosystem (from KEGG)
      Ubiquitin mediated proteolysis, organism-specific biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
    • Ubiquitin mediated proteolysis, conserved biosystem (from KEGG)
      Ubiquitin mediated proteolysis, conserved biosystemProtein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to protein...
    • Wnt signaling pathway, organism-specific biosystem (from KEGG)
      Wnt signaling pathway, organism-specific biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...
    • Wnt signaling pathway, conserved biosystem (from KEGG)
      Wnt signaling pathway, conserved biosystemWnt proteins are secreted morphogens that are required for basic developmental processes, such as cell-fate specification, progenitor-cell proliferation and the control of asymmetric cell division, i...

    General protein information

    Preferred Names
    beta-transducin repeat-containing homologue protein
    Names
    Ci-betaTrCP

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001032454.1NP_001027626.1  beta-transducin repeat-containing homologue protein

      See identical proteins and their annotated locations for NP_001027626.1

      Status: PROVISIONAL

      Source sequence(s)
      AB076893
      UniProtKB/TrEMBL
      Q86SD3
      Related
      ENSCINP00000018885, ENSCINT00000018885
      Conserved Domains (5) summary
      COG2319
      Location:306602
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:319597
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam12125
      Location:157195
      Beta-TrCP_D; D domain of beta-TrCP
      pfam12937
      Location:199246
      F-box-like; F-box-like
      sd00039
      Location:322357
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Ciona intestinalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference KH Primary Assembly

    Genomic

    1. NC_020170.2 Reference KH Primary Assembly

      Range
      2913318..2927252
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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