U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC100142431 katanin p60 ATPase-containing subunit A-like 1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 100142431, updated on 2-Apr-2025
    Gene symbol
    LOC100142431
    Gene description
    katanin p60 ATPase-containing subunit A-like 1
    Locus tag
    TcasGA2_TC013585
    See related
    EnsemblRapid:LOC100142431
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    all
    NEW
    Try the new Gene table
    Try the new Transcript table
    See LOC100142431 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 10 NC_087403.1 (4051239..4053795, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LGX NC_007416.3 (3424976..3427459, complement)

    Chromosome 10 - NC_087403.1Genomic Context describing neighboring genes Neighboring gene DNA (cytosine-5)-methyltransferase PliMCI Neighboring gene trithorax group protein osa Neighboring gene RNA pseudouridylate synthase domain-containing protein 1 Neighboring gene jagunal

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microtubule severing ATPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in microtubule severing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in microtubule cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    katanin p60 ATPase-containing subunit A-like 1
    Names
    AUGUSTUS-3.0.2_13585
    GLEAN_13585
    Spastin-like Protein

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087403.1 Reference icTriCast1.1 Primary Assembly

      Range
      4051239..4053795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008195239.3 → XP_008193461.1  katanin p60 ATPase-containing subunit A-like 1

      See identical proteins and their annotated locations for XP_008193461.1

      UniProtKB/TrEMBL
      D6W745
      Related
      XP_008193461.1, XM_008195239.3
      Conserved Domains (4) summary
      smart00382
      Location:274 → 414
      AAA; ATPases associated with a variety of cellular activities
      pfam00004
      Location:278 → 412
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam09336
      Location:477 → 520
      Vps4_C; Vps4 C terminal oligomerization domain
      cl21455
      Location:243 → 297
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_008195238.3 → XP_008193460.1  katanin p60 ATPase-containing subunit A-like 1

      See identical proteins and their annotated locations for XP_008193460.1

      UniProtKB/TrEMBL
      D6W745
      Related
      XP_008193460.1, XM_008195238.3
      Conserved Domains (4) summary
      smart00382
      Location:274 → 414
      AAA; ATPases associated with a variety of cellular activities
      pfam00004
      Location:278 → 412
      AAA; ATPase family associated with various cellular activities (AAA)
      pfam09336
      Location:477 → 520
      Vps4_C; Vps4 C terminal oligomerization domain
      cl21455
      Location:243 → 297
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials