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    LOC103313104 homeotic protein spalt-major [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 103313104, updated on 2-Apr-2025
    Gene symbol
    LOC103313104
    Gene description
    homeotic protein spalt-major
    Locus tag
    TcasGA2_TC013501
    See related
    EnsemblRapid:LOC103313104
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Also known as
    sal; spalt
    Orthologs
    all
    NEW
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    See LOC103313104 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (6795892..6844080)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (8738074..8786338, complement)

    Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135266308 Neighboring gene uncharacterized LOC103312445 Neighboring gene uncharacterized LOC103313103 Neighboring gene RAB3 GTPase activating protein subunit 1 Neighboring gene leucine-rich repeat and fibronectin type-III domain-containing protein hattifattener

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Ultrabithorax is required for membranous wing identity in the beetle Tribolium castaneum. Tomoyasu Y, et al. Nature, 2005 Feb 10. PMID 15703749
    2. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    3. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    homeotic protein spalt-major
    Names
    GLEAN_13501
    spalt-like protein

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

      Range
      6795892..6844080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_064357108.1 → XP_064213178.1  homeotic protein spalt-major isoform X4

      Related
      XP_064213178.1, XM_064357108.1

    2. XM_008195488.3 → XP_008193710.1  homeotic protein spalt-major isoform X1

      See identical proteins and their annotated locations for XP_008193710.1

      UniProtKB/TrEMBL
      D6WL63
      Related
      XP_008193710.1, XM_008195488.3
      Conserved Domains (4) summary
      cd11674
      Location:1199 → 1261
      lambda-1; inner capsid protein lambda-1 or VP3
      sd00017
      Location:717 → 737
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1242 → 1262
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:729 → 754
      zf-H2C2_2; Zinc-finger double domain

    3. XM_008195491.3 → XP_008193713.1  homeotic protein spalt-major isoform X3

      Related
      XP_008193713.1, XM_008195491.3
      Conserved Domains (4) summary
      cd11674
      Location:1149 → 1211
      lambda-1; inner capsid protein lambda-1 or VP3
      sd00017
      Location:717 → 737
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1192 → 1212
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:729 → 754
      zf-H2C2_2; Zinc-finger double domain

    4. XM_015980525.2 → XP_015836011.1  homeotic protein spalt-major isoform X2

      Related
      XP_015836011.1, XM_015980525.2
      Conserved Domains (4) summary
      cd11674
      Location:1175 → 1237
      lambda-1; inner capsid protein lambda-1 or VP3
      sd00017
      Location:693 → 713
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:1218 → 1238
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:705 → 730
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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