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    sud1 Prolyl 3-hydroxylase sud1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 100141799, updated on 12-Mar-2025

    Summary

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    Gene symbol
    sud1
    Gene description
    Prolyl 3-hydroxylase sud1
    Locus tag
    TcasGA2_TC012354
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all all
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    Genomic context

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    See sud1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 2 NC_087395.1 (15628311..15634227)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG9 NC_007424.3 (5491630..5497526)

    Chromosome 2 - NC_087395.1Genomic Context describing neighboring genes Neighboring gene proteasome-associated protein ECM29 homolog Neighboring gene mucin-4 Neighboring gene transcription factor cwo Neighboring gene calcium homeostasis endoplasmic reticulum protein Neighboring gene SWI/SNF- related protein mor

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-ascorbic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidyl-proline dioxygenase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-proline hydroxylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of translational termination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    prolyl 3-hydroxylase OGFOD1
    Names
    AUGUSTUS-3.0.2_12354
    GLEAN_12354
    Prolyl 3-hydroxylase sudestada1-like Protein
    prolyl 3-hydroxylase sudestada1
    sudestada1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087395.1 Reference icTriCast1.1 Primary Assembly

      Range
      15628311..15634227
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001812146.4 → XP_001812198.1  prolyl 3-hydroxylase OGFOD1

      See identical proteins and their annotated locations for XP_001812198.1

      UniProtKB/TrEMBL
      D6X1U2
      Conserved Domains (1) summary
      cl21496
      Location:340 → 534
      2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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