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    LOC663261 probable 28S rRNA (cytosine-C(5))-methyltransferase [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 663261, updated on 2-Apr-2025
    Gene symbol
    LOC663261
    Gene description
    probable 28S rRNA (cytosine-C(5))-methyltransferase
    Locus tag
    TcasGA2_TC011896
    See related
    EnsemblRapid:LOC663261
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    See LOC663261 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 2 NC_087395.1 (22665705..22668108, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG9 NC_007424.3 (12139214..12141584, complement)

    Chromosome 2 - NC_087395.1Genomic Context describing neighboring genes Neighboring gene disintegrin and metalloproteinase domain-containing protein mind-meld Neighboring gene uncharacterized LOC107398644 Neighboring gene serine/threonine-protein kinase pelle Neighboring gene Dynein axonemal assembly factor 3 Neighboring gene DNA fragmentation factor-related protein 2

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA (cytosine-C5-)-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    probable 28S rRNA (cytosine-C(5))-methyltransferase
    Names
    AUGUSTUS-3.0.2_11896
    GLEAN_11896
    Putative ribosomal RNA methyltransferase NOP2-like Protein
    putative ribosomal RNA methyltransferase NOP2

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087395.1 Reference icTriCast1.1 Primary Assembly

      Range
      22665705..22668108 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_969317.4 → XP_974410.1  probable 28S rRNA (cytosine-C(5))-methyltransferase

      See identical proteins and their annotated locations for XP_974410.1

      UniProtKB/TrEMBL
      D6WZ57
      Related
      XP_974410.1, XM_969317.4
      Conserved Domains (3) summary
      TIGR00446
      Location:268 → 542
      nop2p; NOL1/NOP2/sun family putative RNA methylase
      pfam01189
      Location:333 → 541
      Nol1_Nop2_Fmu; 16S rRNA methyltransferase RsmF
      pfam17125
      Location:255 → 329
      Methyltr_RsmF_N; N-terminal domain of 16S rRNA methyltransferase RsmF
    Nucleotide Protein Strain
    Heading Accession and Version

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