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    LOC663261 probable 28S rRNA (cytosine-C(5))-methyltransferase [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 663261, updated on 13-Feb-2021

    Summary

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    Gene symbol
    LOC663261
    Gene description
    probable 28S rRNA (cytosine-C(5))-methyltransferase
    Locus tag
    TcasGA2_TC011896
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    See LOC663261 in Genome Data Viewer
    Location:
    chromosome: LG9
    Exon count:
    2
    Annotation release Status Assembly LG Location
    103 current Tcas5.2 (GCF_000002335.3) LG9 NC_007424.3 (12139214..12141584, complement)
    102 previous assembly Tcas_3.0 (GCF_000002335.2) LG9 NC_007424.2 (16554246..16556593, complement)

    Linkage Group LG9 - NC_007424.3Genomic Context describing neighboring genes Neighboring gene disintegrin and metalloproteinase domain-containing protein 11 Neighboring gene uncharacterized LOC107398644 Neighboring gene dynein assembly factor 3, axonemal homolog Neighboring gene probable receptor-like protein kinase At5g18500 Neighboring gene uncharacterized LOC663320

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    probable 28S rRNA (cytosine-C(5))-methyltransferase
    Names
    AUGUSTUS-3.0.2_11896
    GLEAN_11896
    Putative ribosomal RNA methyltransferase NOP2-like Protein
    putative ribosomal RNA methyltransferase NOP2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tribolium castaneum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tcas5.2 Primary Assembly

    Genomic

    1. NC_007424.3 Reference Tcas5.2 Primary Assembly

      Range
      12139214..12141584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_969317.3 → XP_974410.1  probable 28S rRNA (cytosine-C(5))-methyltransferase

      See identical proteins and their annotated locations for XP_974410.1

      UniProtKB/TrEMBL
      D6WZ57
      Conserved Domains (3) summary
      TIGR00446
      Location:268 → 542
      nop2p; NOL1/NOP2/sun family putative RNA methylase
      pfam01189
      Location:333 → 541
      Nol1_Nop2_Fmu; 16S rRNA methyltransferase RsmF
      pfam17125
      Location:255 → 329
      Methyltr_RsmF_N; N-terminal domain of 16S rRNA methyltransferase RsmF
    Nucleotide Protein Strain
    Heading Accession and Version

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