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    LOC661994 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 661994, updated on 19-Apr-2024

    Summary

    Gene symbol
    LOC661994
    Gene description
    U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2
    Locus tag
    TcasGA2_TC010403
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 5 NC_087398.1 (7931726..7934124)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG5 NC_007420.3 (7693221..7695625, complement)

    Chromosome 5 - NC_087398.1Genomic Context describing neighboring genes Neighboring gene MKRN2 opposite strand protein Neighboring gene Ubiquitin-like activating enzyme 5 Neighboring gene eyes shut Neighboring gene uncharacterized LOC135266353 Neighboring gene uncharacterized LOC103314940 Neighboring gene pebble Neighboring gene transcription factor GATA-4

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables pre-mRNA 3'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of U2AF complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2
    Names
    AUGUSTUS-3.0.2_10403
    GLEAN_10403
    U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087398.1 Reference icTriCast1.1 Primary Assembly

      Range
      7931726..7934124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008202277.3XP_008200499.1  U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 2

      UniProtKB/TrEMBL
      D6WKS3
      Conserved Domains (2) summary
      cd12540
      Location:195297
      RRM_U2AFBPL; RNA recognition motif in U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 1 (U2AFBPL) and similar proteins
      pfam11221
      Location:77119
      Med21; Subunit 21 of Mediator complex