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    mRpL39 mitochondrial ribosomal protein L39 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 655781, updated on 2-Apr-2025
    Gene symbol
    mRpL39
    Gene description
    mitochondrial ribosomal protein L39
    Locus tag
    TcasGA2_TC010209
    See related
    EnsemblRapid:GeneID_655781
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    See mRpL39 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (8869585..8870845)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (15723368..15724629, complement)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene GATA zinc finger domain-containing protein 1 Neighboring gene Nckx30C Neighboring gene uncharacterized LOC103314307 Neighboring gene uncharacterized LOC103314322 Neighboring gene uncharacterized LOC107398372 Neighboring gene uncharacterized LOC135265694 Neighboring gene threonine--tRNA ligase

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    large ribosomal subunit protein mL39
    Names
    39S ribosomal protein L39, mitochondrial
    39S ribosomal protein L39, mitochondrial-like Protein
    AUGUSTUS-3.0.2_10209
    GLEAN_10209

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      8869585..8870845
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_962343.3 → XP_967436.1  large ribosomal subunit protein mL39

      See identical proteins and their annotated locations for XP_967436.1

      UniProtKB/TrEMBL
      D6WTN4
      Related
      XP_967436.1, XM_962343.3
      Conserved Domains (1) summary
      cd01667
      Location:73 → 125
      TGS_ThrRS_N; TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA. In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and ...
    Nucleotide Protein Strain
    Heading Accession and Version

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