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    LOC664346 FAS-associated factor 1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 664346, updated on 13-Feb-2021

    Summary

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    Gene symbol
    LOC664346
    Gene description
    FAS-associated factor 1
    Locus tag
    TcasGA2_TC009985
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Also known as
    Faf1
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    Genomic context

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    See LOC664346 in Genome Data Viewer
    Location:
    chromosome: LG7
    Exon count:
    12
    Annotation release Status Assembly LG Location
    103 current Tcas5.2 (GCF_000002335.3) LG7 NC_007422.5 (10697925..10703391, complement)
    102 previous assembly Tcas_3.0 (GCF_000002335.2) LG7 NC_007422.4 (15153689..15159009)

    Linkage Group LG7 - NC_007422.5Genomic Context describing neighboring genes Neighboring gene extensin-like Neighboring gene lanC-like protein 3 homolog Neighboring gene glutamate receptor 2-like Neighboring gene glutamate receptor ionotropic, kainate 2 Neighboring gene SAGA-associated factor 29 Neighboring gene polyadenylate-binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    FAS-associated factor 1
    Names
    AUGUSTUS-3.0.2_34804
    FAS-associated factor 1-like protein
    Fas (TNFRSF6) associated factor 1
    GLEAN_09985

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tribolium castaneum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tcas5.2 Primary Assembly

    Genomic

    1. NC_007422.5 Reference Tcas5.2 Primary Assembly

      Range
      10697925..10703391 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008197680.2 → XP_008195902.1  FAS-associated factor 1

      See identical proteins and their annotated locations for XP_008195902.1

      UniProtKB/TrEMBL
      A0A139WEN9
      Conserved Domains (5) summary
      cd14413
      Location:12 → 44
      UBA_FAF1; UBA-like domain found in FAS-associated factor 1 (FAF1) and similar proteins
      pfam05672
      Location:500 → 563
      MAP7; MAP7 (E-MAP-115) family
      cl00155
      Location:577 → 656
      UBQ; Ubiquitin-like proteins
      cl00388
      Location:355 → 490
      Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
      cl21478
      Location:507 → 567
      ATP-synt_B; ATP synthase B/B' CF(0)
    Nucleotide Protein Strain
    Heading Accession and Version

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