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    LOC660305 uncharacterized LOC660305 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 660305, updated on 2-Apr-2025
    Gene symbol
    LOC660305
    Gene description
    uncharacterized LOC660305
    Locus tag
    TcasGA2_TC009542
    See related
    EnsemblRapid:LOC660305
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Also known as
    shn; schnurri
    Orthologs
    all
    NEW
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    See LOC660305 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 3 NC_087396.1 (22591522..22605312, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG7 NC_007422.5 (2224432..2238260)

    Chromosome 3 - NC_087396.1Genomic Context describing neighboring genes Neighboring gene single-strand selective monofunctional uracil DNA glycosylase Neighboring gene Hexamethylene bisacetamide inducible Neighboring gene Single-strand-selective monofunctional uracil-DNA glycosylase Neighboring gene BTB (POZ) domain containing 9 Neighboring gene lectin, mannose binding protein ergic53

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    uncharacterized protein LOC660305
    Names
    AUGUSTUS-3.0.2_09542
    GLEAN_09542

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087396.1 Reference icTriCast1.1 Primary Assembly

      Range
      22591522..22605312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008197088.3 → XP_008195310.1  uncharacterized protein LOC660305

      See identical proteins and their annotated locations for XP_008195310.1

      UniProtKB/TrEMBL
      D6WSD0
      Related
      XP_008195310.1, XM_008197088.3
      Conserved Domains (6) summary
      COG0810
      Location:604 → 746
      TonB; Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis]
      sd00017
      Location:1333 → 1353
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:878 → 898
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:876 → 898
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:890 → 915
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:1336 → 1384
      zf-C2H2_8; C2H2-type zinc ribbon

    2. XM_008197087.3 → XP_008195309.1  uncharacterized protein LOC660305

      See identical proteins and their annotated locations for XP_008195309.1

      UniProtKB/TrEMBL
      D6WSD0
      Related
      XP_008195309.1, XM_008197087.3
      Conserved Domains (6) summary
      COG0810
      Location:604 → 746
      TonB; Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis]
      sd00017
      Location:1333 → 1353
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:878 → 898
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:876 → 898
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:890 → 915
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:1336 → 1384
      zf-C2H2_8; C2H2-type zinc ribbon

    3. XM_008197089.3 → XP_008195311.1  uncharacterized protein LOC660305

      See identical proteins and their annotated locations for XP_008195311.1

      UniProtKB/TrEMBL
      D6WSD0
      Related
      XP_008195311.1, XM_008197089.3
      Conserved Domains (6) summary
      COG0810
      Location:604 → 746
      TonB; Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis]
      sd00017
      Location:1333 → 1353
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:878 → 898
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:876 → 898
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:890 → 915
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:1336 → 1384
      zf-C2H2_8; C2H2-type zinc ribbon

    4. XM_966548.4 → XP_971641.1  uncharacterized protein LOC660305

      See identical proteins and their annotated locations for XP_971641.1

      UniProtKB/TrEMBL
      D6WSD0
      Related
      XP_971641.1, XM_966548.4
      Conserved Domains (6) summary
      COG0810
      Location:604 → 746
      TonB; Periplasmic protein TonB, links inner and outer membranes [Cell wall/membrane/envelope biogenesis]
      sd00017
      Location:1333 → 1353
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:878 → 898
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:876 → 898
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:890 → 915
      zf-H2C2_2; Zinc-finger double domain
      pfam15909
      Location:1336 → 1384
      zf-C2H2_8; C2H2-type zinc ribbon
    Nucleotide Protein Strain
    Heading Accession and Version

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