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    LOC664404 DNA topoisomerase 3-beta-1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 664404, updated on 13-Feb-2021

    Summary

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    Gene symbol
    LOC664404
    Gene description
    DNA topoisomerase 3-beta-1
    Locus tag
    TcasGA2_TC007344
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    See LOC664404 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    9
    Annotation release Status Assembly LG Location
    103 current Tcas5.2 (GCF_000002335.3) LG4 NC_007419.2 (5871397..5876646, complement)
    102 previous assembly Tcas_3.0 (GCF_000002335.2) LG4 NC_007419.1 (6689828..6695115, complement)

    Linkage Group LG4 - NC_007419.2Genomic Context describing neighboring genes Neighboring gene protein bric-a-brac 1 Neighboring gene hypothetical protein Neighboring gene double-stranded RNA-binding protein Staufen homolog 2 Neighboring gene bursicon receptor Neighboring gene uncharacterized LOC107397805

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    DNA topoisomerase 3-beta-1
    Names
    AUGUSTUS-3.0.2_07344
    DNA topoisomerase 3-beta-like Protein
    GLEAN_07344

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tribolium castaneum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tcas5.2 Primary Assembly

    Genomic

    1. NC_007419.2 Reference Tcas5.2 Primary Assembly

      Range
      5871397..5876646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_970411.3 → XP_975504.1  DNA topoisomerase 3-beta-1

      See identical proteins and their annotated locations for XP_975504.1

      UniProtKB/TrEMBL
      D2A047
      Conserved Domains (3) summary
      cd03362
      Location:6 → 166
      TOPRIM_TopoIA_TopoIII; TOPRIM_TopoIA_TopoIII: The topoisomerase-primase (TORPIM) domain found in members of the type IA family of DNA topoisomerases (Topo IA) similar to topoisomerase III. Type IA DNA topoisomerases remove (relax) negative supercoils in the DNA by: cleaving ...
      PRK07219
      Location:7 → 785
      PRK07219; DNA topoisomerase I; Validated
      cd00186
      Location:171 → 592
      TOP1Ac; DNA Topoisomerase, subtype IA; DNA-binding, ATP-binding and catalytic domain of bacterial DNA topoisomerases I and III, and eukaryotic DNA topoisomerase III and eubacterial and archael reverse gyrases. Topoisomerases clevage single or double stranded DNA ...
    Nucleotide Protein Strain
    Heading Accession and Version

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