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    LOC664554 interference hedgehog [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 664554, updated on 13-Feb-2021

    Summary

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    Gene symbol
    LOC664554
    Gene description
    interference hedgehog
    Locus tag
    TcasGA2_TC007250
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
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    Genomic context

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    See LOC664554 in Genome Data Viewer
    Location:
    chromosome: LG4
    Exon count:
    9
    Annotation release Status Assembly LG Location
    103 current Tcas5.2 (GCF_000002335.3) LG4 NC_007419.2 (6907001..6937817, complement)
    102 previous assembly Tcas_3.0 (GCF_000002335.2) LG4 NC_007419.1 (7722898..7752598, complement)

    Linkage Group LG4 - NC_007419.2Genomic Context describing neighboring genes Neighboring gene glutamate receptor ionotropic, delta-2 Neighboring gene olfactory receptor 3 Neighboring gene uncharacterized LOC107397755 Neighboring gene uncharacterized LOC107397756 Neighboring gene uncharacterized LOC107397754 Neighboring gene uncharacterized LOC107397757 Neighboring gene nuclear factor related to kappa-B-binding protein Neighboring gene eukaryotic translation initiation factor 3 subunit F-1 Neighboring gene croquemort

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    interference hedgehog
    Names
    AUGUSTUS-3.0.2_07250
    GLEAN_07250
    Interference hedgehog-like Protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Tribolium castaneum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tcas5.2 Primary Assembly

    Genomic

    1. NC_007419.2 Reference Tcas5.2 Primary Assembly

      Range
      6907001..6937817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008194125.2 → XP_008192347.1  interference hedgehog isoform X1

      See identical proteins and their annotated locations for XP_008192347.1

      Conserved Domains (5) summary
      smart00410
      Location:146 → 224
      IG_like; Immunoglobulin like
      cd00063
      Location:555 → 649
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:233 → 316
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:442 → 537
      fn3; Fibronectin type III domain
      cl11960
      Location:232 → 312
      Ig; Immunoglobulin domain

    2. XM_970550.3 → XP_975643.1  interference hedgehog isoform X2

      Conserved Domains (5) summary
      smart00410
      Location:146 → 224
      IG_like; Immunoglobulin like
      cd00063
      Location:555 → 649
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:233 → 316
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:442 → 537
      fn3; Fibronectin type III domain
      cl11960
      Location:232 → 312
      Ig; Immunoglobulin domain

    3. XM_008194127.2 → XP_008192349.1  interference hedgehog isoform X3

      Conserved Domains (5) summary
      smart00410
      Location:146 → 224
      IG_like; Immunoglobulin like
      cd00063
      Location:555 → 649
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:233 → 316
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:442 → 537
      fn3; Fibronectin type III domain
      cl11960
      Location:232 → 312
      Ig; Immunoglobulin domain

    4. XM_008194128.2 → XP_008192350.1  interference hedgehog isoform X4

      Conserved Domains (5) summary
      smart00410
      Location:146 → 224
      IG_like; Immunoglobulin like
      cd00063
      Location:555 → 649
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:233 → 316
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:442 → 537
      fn3; Fibronectin type III domain
      cl11960
      Location:232 → 312
      Ig; Immunoglobulin domain

    5. XM_008194129.2 → XP_008192351.1  interference hedgehog isoform X5

      Conserved Domains (5) summary
      smart00410
      Location:146 → 224
      IG_like; Immunoglobulin like
      cd00063
      Location:555 → 649
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:233 → 316
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:442 → 537
      fn3; Fibronectin type III domain
      cl11960
      Location:232 → 312
      Ig; Immunoglobulin domain

    6. XM_008194132.2 → XP_008192354.1  interference hedgehog isoform X7

      See identical proteins and their annotated locations for XP_008192354.1

      Conserved Domains (5) summary
      smart00410
      Location:146 → 224
      IG_like; Immunoglobulin like
      cd00063
      Location:555 → 649
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:233 → 316
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:442 → 537
      fn3; Fibronectin type III domain
      cl11960
      Location:232 → 312
      Ig; Immunoglobulin domain

    7. XM_008194130.2 → XP_008192352.1  interference hedgehog isoform X6

      Conserved Domains (5) summary
      smart00410
      Location:146 → 224
      IG_like; Immunoglobulin like
      cd00063
      Location:555 → 649
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:233 → 316
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:442 → 537
      fn3; Fibronectin type III domain
      cl11960
      Location:232 → 312
      Ig; Immunoglobulin domain

    8. XM_008194131.2 → XP_008192353.1  interference hedgehog isoform X7

      See identical proteins and their annotated locations for XP_008192353.1

      Conserved Domains (5) summary
      smart00410
      Location:146 → 224
      IG_like; Immunoglobulin like
      cd00063
      Location:555 → 649
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam07679
      Location:233 → 316
      I-set; Immunoglobulin I-set domain
      pfam00041
      Location:442 → 537
      fn3; Fibronectin type III domain
      cl11960
      Location:232 → 312
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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