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    U2af50 U2 small nuclear riboprotein auxiliary factor 50 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 663317, updated on 2-Apr-2025
    Gene symbol
    U2af50
    Gene description
    U2 small nuclear riboprotein auxiliary factor 50
    Locus tag
    TcasGA2_TC005736
    See related
    EnsemblRapid:GeneID_663317
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
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    See U2af50 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 6 NC_087399.1 (6084828..6090418)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG8 NC_007423.3 (8313568..8319179, complement)

    Chromosome 6 - NC_087399.1Genomic Context describing neighboring genes Neighboring gene sperm flagellar protein 2 Neighboring gene beta1,4-N-acetylgalactosaminyltransferase A Neighboring gene low density lipoprotein receptor adapter protein 1 Neighboring gene calcium-binding and coiled-coil domain-containing protein 2 Neighboring gene uncharacterized LOC663257 Neighboring gene SUMO1 activating enzyme subunit 1

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables poly-pyrimidine tract binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pre-mRNA 3'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of U2-type prespliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2AF complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of commitment complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    splicing factor U2AF 50 kDa subunit
    Names
    AUGUSTUS-3.0.2_05736
    GLEAN_05736
    Splicing factor U2AF 50 kDa subunit-like Protein

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087399.1 Reference icTriCast1.1 Primary Assembly

      Range
      6084828..6090418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008198590.3 → XP_008196812.1  splicing factor U2AF 50 kDa subunit

      See identical proteins and their annotated locations for XP_008196812.1

      UniProtKB/TrEMBL
      D6WWI5
      Related
      XP_008196812.1, XM_008198590.3
      Conserved Domains (3) summary
      cd12230
      Location:116 → 197
      RRM1_U2AF65; RNA recognition motif 1 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
      cd12231
      Location:227 → 303
      RRM2_U2AF65; RNA recognition motif 2 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
      cd12232
      Location:333 → 420
      RRM3_U2AF65; RNA recognition motif 3 found in U2 large nuclear ribonucleoprotein auxiliary factor U2AF 65 kDa subunit (U2AF65) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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