U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    crn crooked neck [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 661183, updated on 10-May-2024

    Summary

    Gene symbol
    crn
    Gene description
    crooked neck
    Locus tag
    TcasGA2_TC004395
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See crn in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 7 NC_087400.1 (96892..99087, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG10 NC_007425.3 (7144169..7146512)

    Chromosome 7 - NC_087400.1Genomic Context describing neighboring genes Neighboring gene bromodomain and WD repeat-containing protein Neighboring gene uncharacterized LOC661294 Neighboring gene protein OPI10 homolog Neighboring gene protein FAM91A1 Neighboring gene Notchless

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    involved_in spliceosomal complex assembly IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    part_of precatalytic spliceosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    protein crooked neck
    Names
    AUGUSTUS-3.0.2_04395
    GLEAN_04395
    Protein crooked neck-like Protein

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087400.1 Reference icTriCast1.1 Primary Assembly

      Range
      96892..99087 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_967361.4XP_972454.1  protein crooked neck

      UniProtKB/TrEMBL
      D6X558
      Conserved Domains (4) summary
      pfam02184
      Location:192222
      HAT; HAT (Half-A-TPR) repeat
      smart00386
      Location:91123
      HAT; HAT (Half-A-TPR) repeats
      COG5107
      Location:65540
      RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
      sd00006
      Location:80105
      TPR; TPR repeat [structural motif]