U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC664100 uncharacterized protein [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 664100, updated on 11-Apr-2024

    Summary

    Gene symbol
    LOC664100
    Gene description
    uncharacterized protein
    Locus tag
    TcasGA2_TC003525
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LOC664100 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 1 NC_087394.1 (30241125..30247656, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG3 NC_007418.3 (6242539..6253072)

    Chromosome 1 - NC_087394.1Genomic Context describing neighboring genes Neighboring gene protein lifeguard 1 Neighboring gene uncharacterized LOC135267269 Neighboring gene Rab10 Neighboring gene dynein axonemal assembly factor 11 Neighboring gene dynein regulatory complex subunit 3 Neighboring gene enoyl-CoA delta isomerase 1, mitochondrial Neighboring gene Protein disulfide isomerase

    Genomic regions, transcripts, and products

    General gene information

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    PubMed 

    General protein information

    Preferred Names
    TOM1-like protein 2
    Names
    AUGUSTUS-3.0.2_03525
    GLEAN_03525

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087394.1 Reference icTriCast1.1 Primary Assembly

      Range
      30241125..30247656 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_970116.5XP_975209.1  TOM1-like protein 2 isoform X2

      Conserved Domains (2) summary
      cd03565
      Location:16157
      VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
      cd14233
      Location:206292
      GAT_TOM1_like; GAT domain found in target of myb protein 1 (Tom1) protein family
    2. XM_008192770.3XP_008190992.1  TOM1-like protein 2 isoform X1

      See identical proteins and their annotated locations for XP_008190992.1

      UniProtKB/TrEMBL
      D6WHD9
      Conserved Domains (2) summary
      cd03565
      Location:16157
      VHS_Tom1; VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of ...
      cd14233
      Location:206292
      GAT_TOM1_like; GAT domain found in target of myb protein 1 (Tom1) protein family

    RNA

    1. XR_010335642.1 RNA Sequence