U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC656169 elongation factor Tu GTP-binding domain-containing protein 1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 656169, updated on 13-Feb-2021

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC656169
    Gene description
    elongation factor Tu GTP-binding domain-containing protein 1
    Locus tag
    TcasGA2_TC002875
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC656169 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    2
    Annotation release Status Assembly LG Location
    103 current Tcas5.2 (GCF_000002335.3) LG3 NC_007418.3 (7610292..7613579, complement)
    102 previous assembly Tcas_3.0 (GCF_000002335.2) LG3 NC_007418.2 (9821960..9825208, complement)

    Linkage Group LG3 - NC_007418.3Genomic Context describing neighboring genes Neighboring gene maternal embryonic leucine zipper kinase Neighboring gene NADH dehydrogenase [ubiquinone] complex I, assembly factor 7 homolog Neighboring gene viral IAP-associated factor homolog Neighboring gene uncharacterized LOC107397490 Neighboring gene paired box protein Pax-5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium., et al. Nature, 2008 Apr 24. PMID 18362917

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    elongation factor Tu GTP-binding domain-containing protein 1
    Names
    AUGUSTUS-3.0.2_02875
    Elongation factor 2-like Protein
    GLEAN_02875

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Tribolium castaneum Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Tcas5.2 Primary Assembly

    Genomic

    1. NC_007418.3 Reference Tcas5.2 Primary Assembly

      Range
      7610292..7613579 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008192844.2 → XP_008191066.1  elongation factor Tu GTP-binding domain-containing protein 1

      See identical proteins and their annotated locations for XP_008191066.1

      UniProtKB/TrEMBL
      D6WHT4
      Conserved Domains (6) summary
      cd04096
      Location:854 → 934
      eEF2_snRNP_like_C; eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart ...
      PTZ00416
      Location:6 → 975
      PTZ00416; elongation factor 2; Provisional
      cd16268
      Location:455 → 537
      EF2_II; Domain II of Elongation Factor 2
      cl02789
      Location:623 → 858
      EFG_like_IV; Elongation Factor G-like domain IV. This family includes the translational elongation factor termed EF-2 (for Archaea and Eukarya) and EF-G (for Bacteria), ribosomal protection proteins that mediate tetracycline resistance and, an evolutionarily ...
      cl20541
      Location:551 → 621
      EFG_III-like; Domain III of Elongation factor G (EF-G) and related proteins
      cl21455
      Location:19 → 243
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases