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    Dfd homeotic protein deformed [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 641550, updated on 2-Apr-2025
    Gene symbol
    Dfd
    Gene description
    homeotic protein deformed
    Locus tag
    TcasGA2_TC000920
    See related
    BEETLEBASE:TC000920; EnsemblRapid:GeneID_641550
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    fruit fly all
    NEW
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    See Dfd in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (6752106..6762031, complement)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (8472334..8482144)

    Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135265867 Neighboring gene zerknullt Neighboring gene microRNA mir-993 Neighboring gene uncharacterized LOC135265883 Neighboring gene microRNA mir-10 Neighboring gene cephalothorax

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Implications of the Tribolium Deformed mutant phenotype for the evolution of Hox gene function. Brown S, et al. Proc Natl Acad Sci U S A, 2000 Apr 25. PMID 10781053, Free PMC Article
    2. A strategy for mapping bicoid on the phylogenetic tree. Brown S, et al. Curr Biol, 2001 Jan 23. PMID 11231138
    3. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    4. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterior/posterior pattern specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    homeotic protein deformed; transcription factor deformed
    Names
    AUGUSTUS-3.0.2_00920
    Deformed
    GLEAN_00920

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039421.1 → NP_001034510.1  homeotic protein deformed

      See identical proteins and their annotated locations for NP_001034510.1

      Status: PROVISIONAL

      Source sequence(s)
      U81038
      UniProtKB/TrEMBL
      D6W938, P92161
      Related
      NP_001034510.1, NM_001039421.1
      Conserved Domains (1) summary
      pfam00046
      Location:237 → 289
      Homeobox; Homeobox domain

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

      Range
      6752106..6762031 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008203016.3 → XP_008201238.1  transcription factor deformed isoform X1

      UniProtKB/TrEMBL
      D6W938
      Related
      XP_008201238.1, XM_008203016.3
      Conserved Domains (1) summary
      pfam00046
      Location:248 → 300
      Homeobox; Homeobox domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials