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    LOC662865 acyl-CoA desaturase 1 [ Tribolium castaneum (red flour beetle) ]

    Gene ID: 662865, updated on 2-Apr-2025
    Gene symbol
    LOC662865
    Gene description
    acyl-CoA desaturase 1
    Locus tag
    TcasGA2_TC000549
    See related
    EnsemblRapid:LOC662865
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Tribolium castaneum
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
    Orthologs
    all
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    See LOC662865 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 4 NC_087397.1 (5293150..5296895)
    103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG2 NC_007417.3 (9922556..9924799, complement)

    Chromosome 4 - NC_087397.1Genomic Context describing neighboring genes Neighboring gene venom protease Neighboring gene trypsin-1-like Neighboring gene melanization protease 1-like Neighboring gene trans-Golgi network integral membrane protein 2 Neighboring gene IQ and ubiquitin-like domain-containing protein Neighboring gene lysophospholipid acyltransferase 6

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Unexpected functional diversity in the fatty acid desaturases of the flour beetle Tribolium castaneum and identification of key residues determining activity. Haritos VS, et al. Insect Biochem Mol Biol, 2014 Aug. PMID 24880119
    2. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
    3. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables iron ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables serine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables stearoyl-CoA 9-desaturase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in unsaturated fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    acyl-CoA desaturase 1
    Names
    AUGUSTUS-3.0.2_00549
    Acyl-CoA desaturase 2-like Protein
    GLEAN_00549
    fatty acid desaturase D5
    NP_001308601.1
    XP_008201015.2
    XP_015840579.1
    XP_015840580.1
    XP_974033.1

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001321672.1 → NP_001308601.1  acyl-CoA desaturase 1

      Status: PROVISIONAL

      Source sequence(s)
      KF576671
      UniProtKB/TrEMBL
      A0A096XDB4
      Related
      NP_001308601.1, NM_001321672.1
      Conserved Domains (2) summary
      cd03505
      Location:59 → 294
      Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
      pfam00487
      Location:54 → 263
      FA_desaturase; Fatty acid desaturase

    RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference icTriCast1.1 Primary Assembly

    Genomic

    1. NC_087397.1 Reference icTriCast1.1 Primary Assembly

      Range
      5293150..5296895
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015985094.2 → XP_015840580.1  acyl-CoA desaturase 1 isoform X2

      UniProtKB/TrEMBL
      D6W9N6
      Related
      XP_015840580.1, XM_015985094.2
      Conserved Domains (2) summary
      cd03505
      Location:59 → 294
      Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
      pfam00487
      Location:54 → 263
      FA_desaturase; Fatty acid desaturase

    2. XM_968940.4 → XP_974033.1  acyl-CoA desaturase 1 isoform X2

      See identical proteins and their annotated locations for XP_974033.1

      UniProtKB/TrEMBL
      D6W9N6
      Related
      XP_974033.1, XM_968940.4
      Conserved Domains (2) summary
      cd03505
      Location:59 → 294
      Delta9-FADS-like; The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide ...
      pfam00487
      Location:54 → 263
      FA_desaturase; Fatty acid desaturase

    3. XM_008202793.3 → XP_008201015.2  acyl-CoA desaturase 1 isoform X1

      Related
      XP_008201015.2, XM_008202793.3

    4. XM_015985093.2 → XP_015840579.1  acyl-CoA desaturase 1 isoform X3

      Related
      XP_015840579.1, XM_015985093.2
    Nucleotide Protein Strain
    Heading Accession and Version

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    Research Materials