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    trcF transcription-repair coupling factor [ Streptococcus mutans UA159 ]

    Gene ID: 1029400, updated on 6-Aug-2016

    Summary

    Gene symbol
    trcF
    Gene description
    transcription-repair coupling factor
    Locus tag
    SMU_08
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Streptococcus mutans UA159 (strain: UA159)
    Lineage
    Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
    Old locus tag
    SMU.08

    Genomic context

    Sequence:
    NC_004350.2 (5234..8722)

    NC_004350.2Genomic Context describing neighboring genes Neighboring gene GTP-binding protein YchF Neighboring gene peptidyl-tRNA hydrolase Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

    Pathways from BioSystems

    • Nucleotide excision repair, organism-specific biosystem (from KEGG)
      Nucleotide excision repair, organism-specific biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...
    • Nucleotide excision repair, conserved biosystem (from KEGG)
      Nucleotide excision repair, conserved biosystemNucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the ...

    General protein information

    Names
    transcription-repair coupling factor
    NP_720493.1
    • Best Blastp Hit: gb|AAD03810.1| (AF054624) transcription-repair coupling factor [Lactobacillus sakei]

    NCBI Reference Sequences (RefSeq)

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004350.2 Reference assembly

      Range
      5234..8722
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_720493.1 transcription-repair coupling factor [Streptococcus mutans UA159]

      See identical proteins and their annotated locations for NP_720493.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q8DWN4
      Conserved Domains (6) summary
      smart00982
      Location:10121110
      TRCF; This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli
      smart01058
      Location:487584
      CarD_TRCF; CarD-like/TRCF domain
      COG1197
      Location:251150
      Mfd; Transcription-repair coupling factor (superfamily II helicase) [Replication, recombination and repair, Transcription]
      cd00079
      Location:796926
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00270
      Location:613776
      DEAD; DEAD/DEAH box helicase
      pfam14814
      Location:141214
      UB2H; Bifunctional transglycosylase second domain
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