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    Caper RNA-binding protein 39-like protein Caper [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100113978, updated on 10-Oct-2024
    Gene symbol
    Caper
    Gene description
    RNA-binding protein 39-like protein Caper
    See related
    NASONIABASE:NV19170
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
    Also known as
    Rbm39
    Orthologs
    fruit fly honey bee all
    NEW
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    See Caper in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 3 Unlocalized Scaffold NW_022279628.1 (306387..549573)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 3 Unlocalized Scaffold NW_022279628.1 (306901..549573)

    NW_022279628.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103315351 Neighboring gene uncharacterized LOC103316743 Neighboring gene S-phase kinase-associated protein 1 Neighboring gene uncharacterized LOC116416836 Neighboring gene uncharacterized LOC107981557 Neighboring gene protein bfr2-like

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    RNA binding motif protein 39; RNA-binding protein 39-like protein Caper
    Names
    RNA-binding protein 39 pseudogene

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001142492.1 → NP_001135964.1  RNA-binding protein 39-like protein Caper

      Status: PROVISIONAL

      Source sequence(s)
      ES640046, GE372806, GE452151
      UniProtKB/TrEMBL
      A0A7M6UF14
      Conserved Domains (5) summary
      cd12283
      Location:158 → 230
      RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
      cd12284
      Location:257 → 329
      RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
      cd12285
      Location:405 → 489
      RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
      TIGR01661
      Location:164 → 493
      ELAV_HUD_SF; ELAV/HuD family splicing factor
      pfam15519
      Location:347 → 421
      RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein

    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NW_022279628.1 Reference Nvit_psr_1.1

      Range
      306387..549573
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031926988.2 → XP_031782848.1  RNA binding motif protein 39 isoform X3

      UniProtKB/TrEMBL
      A0A7M7Q8V0
      Conserved Domains (1) summary
      TIGR01622
      Location:159 → 511
      SF-CC1; splicing factor, CC1-like family

    2. XM_032601834.1 → XP_032457725.1  RNA binding motif protein 39 isoform X8

      UniProtKB/TrEMBL
      A0A7M7R1F1
      Conserved Domains (1) summary
      TIGR01622
      Location:147 → 410
      SF-CC1; splicing factor, CC1-like family

    3. XM_032601830.1 → XP_032457721.1  RNA binding motif protein 39 isoform X5

      UniProtKB/TrEMBL
      A0A7M7R3B2
      Conserved Domains (1) summary
      TIGR01622
      Location:147 → 499
      SF-CC1; splicing factor, CC1-like family

    4. XM_032601832.1 → XP_032457723.1  RNA binding motif protein 39 isoform X5

      UniProtKB/TrEMBL
      A0A7M7R3B2
      Conserved Domains (1) summary
      TIGR01622
      Location:147 → 499
      SF-CC1; splicing factor, CC1-like family

    5. XM_031926991.1 → XP_031782851.1  RNA binding motif protein 39 isoform X5

      UniProtKB/TrEMBL
      A0A7M7R3B2
      Conserved Domains (1) summary
      TIGR01622
      Location:147 → 499
      SF-CC1; splicing factor, CC1-like family

    6. XM_031926990.2 → XP_031782850.1  RNA binding motif protein 39 isoform X5

      UniProtKB/TrEMBL
      A0A7M7R3B2
      Conserved Domains (1) summary
      TIGR01622
      Location:147 → 499
      SF-CC1; splicing factor, CC1-like family

    7. XM_031926987.1 → XP_031782847.1  RNA binding motif protein 39 isoform X2

      UniProtKB/TrEMBL
      A0A7M7Q712
      Conserved Domains (1) summary
      TIGR01622
      Location:160 → 512
      SF-CC1; splicing factor, CC1-like family

    8. XM_031926986.1 → XP_031782846.1  RNA binding motif protein 39 isoform X1

      UniProtKB/TrEMBL
      A0A7M7QA77
      Conserved Domains (1) summary
      TIGR01622
      Location:176 → 528
      SF-CC1; splicing factor, CC1-like family

    9. XM_031926992.1 → XP_031782852.1  RNA binding motif protein 39 isoform X6

      UniProtKB/TrEMBL
      A0A7M7QBA6
      Conserved Domains (1) summary
      TIGR01622
      Location:176 → 439
      SF-CC1; splicing factor, CC1-like family

    10. XM_031926993.1 → XP_031782853.1  RNA binding motif protein 39 isoform X7

      UniProtKB/TrEMBL
      A0A7M7T8P8
      Conserved Domains (1) summary
      TIGR01622
      Location:45 → 423
      SF-CC1; splicing factor, CC1-like family

    11. XM_031926989.1 → XP_031782849.1  RNA binding motif protein 39 isoform X4

      UniProtKB/TrEMBL
      A0A7M7Q6U4
      Conserved Domains (1) summary
      TIGR01622
      Location:155 → 507
      SF-CC1; splicing factor, CC1-like family

    12. XM_032601833.1 → XP_032457724.1  RNA binding motif protein 39 isoform X5

      UniProtKB/TrEMBL
      A0A7M7R3B2
      Conserved Domains (1) summary
      TIGR01622
      Location:147 → 499
      SF-CC1; splicing factor, CC1-like family

    13. XM_032601831.1 → XP_032457722.1  RNA binding motif protein 39 isoform X5

      UniProtKB/TrEMBL
      A0A7M7R3B2
      Conserved Domains (1) summary
      TIGR01622
      Location:147 → 499
      SF-CC1; splicing factor, CC1-like family
    Nucleotide Protein Strain
    Heading Accession and Version

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