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    Fmr1 synaptic functional regulator FMR1 [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100121281, updated on 10-Oct-2024
    Gene symbol
    Fmr1
    Gene description
    synaptic functional regulator FMR1
    See related
    NASONIABASE:NV16365
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
    Orthologs
    fruit fly honey bee all
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    See Fmr1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 5 Unlocalized Scaffold NC_045761.1 (4304474..4313806)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 5 Unlocalized Scaffold NW_022279650.1 (4304675..4313806)

    Chromosome 5 - NC_045761.1Genomic Context describing neighboring genes Neighboring gene dusky Neighboring gene WD repeat-containing protein 44 Neighboring gene KICSTOR complex protein SZT2 Neighboring gene non-lysosomal glucosylceramidase Neighboring gene cytochrome P450 CYP12A2-like

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA 3'-UTR binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation regulator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anterograde axonal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in central nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in negative regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of dendrite morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of dendritic spine development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of modification of synaptic structure IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of translation at postsynapse, modulating synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in axon IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in dendritic spine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal cell body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in neuronal ribonucleoprotein granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    synaptic functional regulator FMR1

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045761.1 Reference Nvit_psr_1.1

      Range
      4304474..4313806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008210890.4 → XP_008209112.1  synaptic functional regulator FMR1 isoform X8

      UniProtKB/TrEMBL
      A0A7M7HBT7
      Conserved Domains (4) summary
      cd00105
      Location:221 → 281
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam00013
      Location:284 → 354
      KH_1; KH domain
      pfam05641
      Location:62 → 120
      Agenet; Agenet domain
      pfam12235
      Location:357 → 399
      FXMRP1_C_core; Fragile X-related 1 protein core C terminal

    2. XM_008210887.4 → XP_008209109.1  synaptic functional regulator FMR1 isoform X1

      See identical proteins and their annotated locations for XP_008209109.1

      UniProtKB/TrEMBL
      A0A7M7HC41
      Conserved Domains (4) summary
      smart00322
      Location:242 → 305
      KH; K homology RNA-binding domain
      cd00105
      Location:308 → 384
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      pfam05641
      Location:62 → 120
      Agenet; Agenet domain
      pfam12235
      Location:386 → 428
      FXMRP1_C_core; Fragile X-related 1 protein core C terminal

    3. XM_032600593.1 → XP_032456484.1  synaptic functional regulator FMR1 isoform X6

      UniProtKB/TrEMBL
      A0A7M7R2Q5

    4. XM_031932023.2 → XP_031787883.1  synaptic functional regulator FMR1 isoform X5

      UniProtKB/TrEMBL
      A0A7M7QMA4
      Conserved Domains (5) summary
      pfam12235
      Location:386 → 480
      FXMRP1_C_core; Fragile X-related 1 protein core C terminal
      pfam17904
      Location:123 → 207
      KH_9; FMRP KH0 domain
      cd20402
      Location:3 → 52
      Tudor_Agenet_FMRP-like_rpt1; first Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cl00098
      Location:306 → 390
      KH-I; K homology (KH) RNA-binding domain, type I
      cl02573
      Location:61 → 126
      Tudor_SF; Tudor domain superfamily

    5. XM_008210888.4 → XP_008209110.1  synaptic functional regulator FMR1 isoform X2

      See identical proteins and their annotated locations for XP_008209110.1

      UniProtKB/TrEMBL
      A0A7M7LR74
      Conserved Domains (4) summary
      smart00322
      Location:242 → 305
      KH; K homology RNA-binding domain
      pfam00013
      Location:308 → 378
      KH_1; KH domain
      pfam05641
      Location:62 → 120
      Agenet; Agenet domain
      pfam12235
      Location:381 → 423
      FXMRP1_C_core; Fragile X-related 1 protein core C terminal

    6. XM_031932020.2 → XP_031787880.1  synaptic functional regulator FMR1 isoform X3

      UniProtKB/TrEMBL
      A0A7M7QHJ6
      Conserved Domains (5) summary
      pfam12235
      Location:362 → 456
      FXMRP1_C_core; Fragile X-related 1 protein core C terminal
      pfam17904
      Location:123 → 207
      KH_9; FMRP KH0 domain
      cd20402
      Location:3 → 52
      Tudor_Agenet_FMRP-like_rpt1; first Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cl00098
      Location:282 → 366
      KH-I; K homology (KH) RNA-binding domain, type I
      cl02573
      Location:61 → 126
      Tudor_SF; Tudor domain superfamily

    7. XM_032600594.1 → XP_032456485.1  synaptic functional regulator FMR1 isoform X7

      UniProtKB/TrEMBL
      A0A7M7TDY5

    8. XM_031932022.2 → XP_031787882.1  synaptic functional regulator FMR1 isoform X4

      UniProtKB/TrEMBL
      A0A7M7QMJ9
      Conserved Domains (5) summary
      pfam12235
      Location:357 → 451
      FXMRP1_C_core; Fragile X-related 1 protein core C terminal
      pfam17904
      Location:123 → 207
      KH_9; FMRP KH0 domain
      cd20402
      Location:3 → 52
      Tudor_Agenet_FMRP-like_rpt1; first Tudor-like Agenet domain found in the fragile X mental retardation protein (FMRP) family
      cl00098
      Location:282 → 361
      KH-I; K homology (KH) RNA-binding domain, type I
      cl02573
      Location:61 → 126
      Tudor_SF; Tudor domain superfamily
    Nucleotide Protein Strain
    Heading Accession and Version

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