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    LOC100118477 TAR DNA-binding protein 43 [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100118477, updated on 12-Aug-2022

    Summary

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    Gene symbol
    LOC100118477
    Gene description
    TAR DNA-binding protein 43
    See related
    NASONIABASE:NV15536
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
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    Genomic context

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    See LOC100118477 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 3 Unlocalized Scaffold NC_045759.1 (23013806..23029329, complement)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 3 Unlocalized Scaffold NW_022279634.1 (1730792..1745702)

    Chromosome 3 - NC_045759.1Genomic Context describing neighboring genes Neighboring gene battenin Neighboring gene putative neutral sphingomyelinase Neighboring gene metabotropic glutamate receptor 1 Neighboring gene dnaJ homolog subfamily C member 7 Neighboring gene mitochondrial tRNA-specific 2-thiouridylase 1 Neighboring gene dymeclin Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit X Neighboring gene calsyntenin-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    TAR DNA-binding protein 43; heterogeneous nuclear ribonucleoprotein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045759.1 Reference Nvit_psr_1.1

      Range
      23013806..23029329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031927458.2 → XP_031783318.1  TAR DNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A0A7M7Q7T3
      Conserved Domains (3) summary
      pfam18694
      Location:3 → 76
      TDP43_N; Transactive response DNA-binding protein N-terminal domain
      cd12321
      Location:106 → 179
      RRM1_TDP43; RNA recognition motif 1 (RRM1) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins
      cd12322
      Location:191 → 260
      RRM2_TDP43; RNA recognition motif 2 (RRM2) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins

    2. XM_001602386.6 → XP_001602436.2  TAR DNA-binding protein 43 isoform X3

      UniProtKB/TrEMBL
      A0A7M7LJ58
      Conserved Domains (2) summary
      cd12321
      Location:106 → 182
      RRM1_TDP43; RNA recognition motif 1 in TAR DNA-binding protein 43 (TDP-43) and similar proteins
      cd12322
      Location:191 → 260
      RRM2_TDP43; RNA recognition motif 2 in TAR DNA-binding protein 43 (TDP-43) and similar proteins

    3. XM_008207969.4 → XP_008206191.1  heterogeneous nuclear ribonucleoprotein 1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7HAX2
      Conserved Domains (2) summary
      COG0724
      Location:78 → 239
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12321
      Location:106 → 182
      RRM1_TDP43; RNA recognition motif 1 in TAR DNA-binding protein 43 (TDP-43) and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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