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    LOC100118477 TAR DNA-binding protein 43 [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100118477, updated on 12-Aug-2022

    Summary

    Gene symbol
    LOC100118477
    Gene description
    TAR DNA-binding protein 43
    See related
    NASONIABASE:NV15536
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
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    Genomic context

    See LOC100118477 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 3 Unlocalized Scaffold NC_045759.1 (23013806..23029329, complement)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 3 Unlocalized Scaffold NW_022279634.1 (1730792..1745702)

    Chromosome 3 - NC_045759.1Genomic Context describing neighboring genes Neighboring gene battenin Neighboring gene putative neutral sphingomyelinase Neighboring gene metabotropic glutamate receptor 1 Neighboring gene dnaJ homolog subfamily C member 7 Neighboring gene mitochondrial tRNA-specific 2-thiouridylase 1 Neighboring gene dymeclin Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit X Neighboring gene calsyntenin-1

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    TAR DNA-binding protein 43; heterogeneous nuclear ribonucleoprotein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045759.1 Reference Nvit_psr_1.1

      Range
      23013806..23029329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031927458.2XP_031783318.1  TAR DNA-binding protein 43 isoform X1

      UniProtKB/TrEMBL
      A0A7M7Q7T3
      Conserved Domains (3) summary
      pfam18694
      Location:376
      TDP43_N; Transactive response DNA-binding protein N-terminal domain
      cd12321
      Location:106179
      RRM1_TDP43; RNA recognition motif 1 (RRM1) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins
      cd12322
      Location:191260
      RRM2_TDP43; RNA recognition motif 2 (RRM2) found in TAR DNA-binding protein 43 (TDP-43) and similar proteins
    2. XM_001602386.6XP_001602436.2  TAR DNA-binding protein 43 isoform X3

      UniProtKB/TrEMBL
      A0A7M7LJ58
      Conserved Domains (2) summary
      cd12321
      Location:106182
      RRM1_TDP43; RNA recognition motif 1 in TAR DNA-binding protein 43 (TDP-43) and similar proteins
      cd12322
      Location:191260
      RRM2_TDP43; RNA recognition motif 2 in TAR DNA-binding protein 43 (TDP-43) and similar proteins
    3. XM_008207969.4XP_008206191.1  heterogeneous nuclear ribonucleoprotein 1 isoform X2

      UniProtKB/TrEMBL
      A0A7M7HAX2
      Conserved Domains (2) summary
      COG0724
      Location:78239
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12321
      Location:106182
      RRM1_TDP43; RNA recognition motif 1 in TAR DNA-binding protein 43 (TDP-43) and similar proteins