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    LOC100121501 histidine--tRNA ligase, cytoplasmic [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100121501, updated on 12-Aug-2022

    Summary

    Gene symbol
    LOC100121501
    Gene description
    histidine--tRNA ligase, cytoplasmic
    See related
    NASONIABASE:NV14432
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
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    Genomic context

    See LOC100121501 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 3 Unlocalized Scaffold NC_045759.1 (1344702..1349319)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 3 Unlocalized Scaffold NW_022279627.1 (11787963..11792552, complement)

    Chromosome 3 - NC_045759.1Genomic Context describing neighboring genes Neighboring gene proton channel OtopLc Neighboring gene proton channel OtopLc Neighboring gene open rectifier potassium channel protein 1 Neighboring gene uncharacterized LOC100118543 Neighboring gene zinc finger protein 143 Neighboring gene uncharacterized LOC100118576 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    histidine--tRNA ligase, cytoplasmic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045759.1 Reference Nvit_psr_1.1

      Range
      1344702..1349319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008205630.4XP_008203852.1  histidine--tRNA ligase, cytoplasmic isoform X3

      UniProtKB/TrEMBL
      A0A7M7H9G5, K7IZA5
      Conserved Domains (4) summary
      COG0124
      Location:54494
      HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
      cd00773
      Location:67385
      HisRS-like_core; Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent ...
      cd00859
      Location:399490
      HisRS_anticodon; HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is ...
      cl00349
      Location:446
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
    2. XM_008205631.4XP_008203853.1  histidine--tRNA ligase, cytoplasmic isoform X4

      See identical proteins and their annotated locations for XP_008203853.1

      UniProtKB/TrEMBL
      A0A7M7H1Y3
      Conserved Domains (2) summary
      PLN02972
      Location:49489
      PLN02972; Histidyl-tRNA synthetase
      cl00349
      Location:2342
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
    3. XM_001605062.6XP_001605112.2  histidine--tRNA ligase, cytoplasmic isoform X2

      UniProtKB/TrEMBL
      A0A7M7GF17
      Conserved Domains (5) summary
      COG0124
      Location:149589
      HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
      cd00773
      Location:162480
      HisRS-like_core; Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent ...
      cd00859
      Location:494585
      HisRS_anticodon; HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is ...
      cl00349
      Location:441
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
      cl02776
      Location:3086
      GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family
    4. XM_032597919.1XP_032453810.1  histidine--tRNA ligase, cytoplasmic isoform X4

      UniProtKB/TrEMBL
      A0A7M7H1Y3
      Conserved Domains (2) summary
      PLN02972
      Location:49489
      PLN02972; Histidyl-tRNA synthetase
      cl00349
      Location:2342
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
    5. XM_031926475.2XP_031782335.1  histidine--tRNA ligase, cytoplasmic isoform X1

      UniProtKB/TrEMBL
      A0A7M7Q843
    6. XM_008205632.4XP_008203854.1  histidine--tRNA ligase, cytoplasmic isoform X4

      See identical proteins and their annotated locations for XP_008203854.1

      UniProtKB/TrEMBL
      A0A7M7H1Y3
      Conserved Domains (2) summary
      PLN02972
      Location:49489
      PLN02972; Histidyl-tRNA synthetase
      cl00349
      Location:2342
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...