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    LOC100121501 histidine--tRNA ligase, cytoplasmic [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100121501, updated on 12-Aug-2022

    Summary

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    Gene symbol
    LOC100121501
    Gene description
    histidine--tRNA ligase, cytoplasmic
    See related
    NASONIABASE:NV14432
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Parasitoida; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
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    Genomic context

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    See LOC100121501 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 3 Unlocalized Scaffold NC_045759.1 (1344702..1349319)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 3 Unlocalized Scaffold NW_022279627.1 (11787963..11792552, complement)

    Chromosome 3 - NC_045759.1Genomic Context describing neighboring genes Neighboring gene proton channel OtopLc Neighboring gene proton channel OtopLc Neighboring gene open rectifier potassium channel protein 1 Neighboring gene uncharacterized LOC100118543 Neighboring gene zinc finger protein 143 Neighboring gene uncharacterized LOC100118576 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    histidine--tRNA ligase, cytoplasmic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045759.1 Reference Nvit_psr_1.1

      Range
      1344702..1349319
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008205630.4 → XP_008203852.1  histidine--tRNA ligase, cytoplasmic isoform X3

      UniProtKB/TrEMBL
      A0A7M7H9G5, K7IZA5
      Conserved Domains (4) summary
      COG0124
      Location:54 → 494
      HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
      cd00773
      Location:67 → 385
      HisRS-like_core; Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent ...
      cd00859
      Location:399 → 490
      HisRS_anticodon; HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is ...
      cl00349
      Location:4 → 46
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...

    2. XM_008205631.4 → XP_008203853.1  histidine--tRNA ligase, cytoplasmic isoform X4

      See identical proteins and their annotated locations for XP_008203853.1

      UniProtKB/TrEMBL
      A0A7M7H1Y3
      Conserved Domains (2) summary
      PLN02972
      Location:49 → 489
      PLN02972; Histidyl-tRNA synthetase
      cl00349
      Location:23 → 42
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...

    3. XM_001605062.6 → XP_001605112.2  histidine--tRNA ligase, cytoplasmic isoform X2

      UniProtKB/TrEMBL
      A0A7M7GF17
      Conserved Domains (5) summary
      COG0124
      Location:149 → 589
      HisS; Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
      cd00773
      Location:162 → 480
      HisRS-like_core; Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent ...
      cd00859
      Location:494 → 585
      HisRS_anticodon; HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is ...
      cl00349
      Location:4 → 41
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
      cl02776
      Location:30 → 86
      GST_C_family; C-terminal, alpha helical domain of the Glutathione S-transferase family

    4. XM_032597919.1 → XP_032453810.1  histidine--tRNA ligase, cytoplasmic isoform X4

      UniProtKB/TrEMBL
      A0A7M7H1Y3
      Conserved Domains (2) summary
      PLN02972
      Location:49 → 489
      PLN02972; Histidyl-tRNA synthetase
      cl00349
      Location:23 → 42
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...

    5. XM_031926475.2 → XP_031782335.1  histidine--tRNA ligase, cytoplasmic isoform X1

      UniProtKB/TrEMBL
      A0A7M7Q843

    6. XM_008205632.4 → XP_008203854.1  histidine--tRNA ligase, cytoplasmic isoform X4

      See identical proteins and their annotated locations for XP_008203854.1

      UniProtKB/TrEMBL
      A0A7M7H1Y3
      Conserved Domains (2) summary
      PLN02972
      Location:49 → 489
      PLN02972; Histidyl-tRNA synthetase
      cl00349
      Location:23 → 42
      S15_NS1_EPRS_RNA-bind; S15/NS1/EPRS_RNA-binding domain. This short domain consists of a helix-turn-helix structure, which can bind to several types of RNA. It is found in the ribosomal protein S15, the influenza A viral nonstructural protein (NSA) and in several eukaryotic ...
    Nucleotide Protein Strain
    Heading Accession and Version

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