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    Ssdp Sequence-specific single-stranded DNA-binding protein [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100120145, updated on 10-Oct-2024

    Summary

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    Gene symbol
    Ssdp
    Gene description
    Sequence-specific single-stranded DNA-binding protein
    See related
    NASONIABASE:NV13926
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
    Orthologs
    fruit fly honey bee all
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    Genomic context

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    See Ssdp in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 1 Unlocalized Scaffold NC_045757.1 (591940..608006, complement)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 1 Unlocalized Scaffold NW_022279603.1 (593664..608006, complement)

    Chromosome 1 - NC_045757.1Genomic Context describing neighboring genes Neighboring gene Heparan sulfate 3-O sulfotransferase-B Neighboring gene histamine-gated chloride channel 1 Neighboring gene excitatory amino acid transporter 1 Neighboring gene Autophagy-related 10 Neighboring gene cytochrome P450 9e2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    single-stranded DNA-binding protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045757.1 Reference Nvit_psr_1.1

      Range
      591940..608006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031921690.2 → XP_031777550.1  single-stranded DNA-binding protein 3 isoform X4

      UniProtKB/TrEMBL
      A0A7M7PXJ2
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 365
      SSDP; Single-stranded DNA binding protein, SSDP

    2. XM_031921687.2 → XP_031777547.1  single-stranded DNA-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A7M7PV72
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 401
      SSDP; Single-stranded DNA binding protein, SSDP

    3. XM_031921688.2 → XP_031777548.1  single-stranded DNA-binding protein 3 isoform X2

      UniProtKB/TrEMBL
      A0A7M7PXD2
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 391
      SSDP; Single-stranded DNA binding protein, SSDP

    4. XM_031921691.1 → XP_031777551.1  single-stranded DNA-binding protein 3 isoform X5

      UniProtKB/TrEMBL
      A0A7M7PZD8
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 355
      SSDP; Single-stranded DNA binding protein, SSDP

    5. XM_031921686.1 → XP_031777546.1  single-stranded DNA-binding protein 3 isoform X1

      UniProtKB/TrEMBL
      A0A7M7PV72
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 401
      SSDP; Single-stranded DNA binding protein, SSDP

    6. XM_031921689.2 → XP_031777549.1  single-stranded DNA-binding protein 3 isoform X3

      UniProtKB/TrEMBL
      A0A7M7PVE0
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 401
      SSDP; Single-stranded DNA binding protein, SSDP

    7. XM_032595894.1 → XP_032451785.1  single-stranded DNA-binding protein 3 isoform X7

      UniProtKB/TrEMBL
      A0A7M7QM50
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 355
      SSDP; Single-stranded DNA binding protein, SSDP

    8. XM_032595893.1 → XP_032451784.1  single-stranded DNA-binding protein 3 isoform X6

      UniProtKB/TrEMBL
      A0A7M7QPF5
      Conserved Domains (2) summary
      smart00667
      Location:17 → 43
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81 → 365
      SSDP; Single-stranded DNA binding protein, SSDP
    Nucleotide Protein Strain
    Heading Accession and Version

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