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    LOC100122804 protein trachealess [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100122804, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC100122804
    Gene description
    protein trachealess
    See related
    NASONIABASE:NV13641
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
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    Genomic context

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    See LOC100122804 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 5 Unlocalized Scaffold NC_045761.1 (1624914..1715038, complement)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 5 Unlocalized Scaffold NW_022279650.1 (1624914..1715038, complement)

    Chromosome 5 - NC_045761.1Genomic Context describing neighboring genes Neighboring gene sodium-coupled monocarboxylate transporter 2-like Neighboring gene uncharacterized LOC100679626 Neighboring gene uncharacterized LOC103315333 Neighboring gene uncharacterized LOC100679702 Neighboring gene mitochondrial uncoupling protein 2 Neighboring gene transfer RNA isoleucine (anticodon AAU)

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein trachealess

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045761.1 Reference Nvit_psr_1.1

      Range
      1624914..1715038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031931825.1 → XP_031787685.1  protein trachealess isoform X4

      UniProtKB/TrEMBL
      A0A7M7QLW2
      Conserved Domains (3) summary
      smart00091
      Location:237 → 293
      PAS; PAS domain
      pfam08447
      Location:434 → 521
      PAS_3; PAS fold
      cd19733
      Location:136 → 212
      bHLH-PAS_trachealess_like; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster protein trachealess and similar proteins

    2. XM_031931824.1 → XP_031787684.1  protein trachealess isoform X3

      UniProtKB/TrEMBL
      A0A7M7QM54
      Conserved Domains (3) summary
      smart00091
      Location:247 → 303
      PAS; PAS domain
      pfam08447
      Location:435 → 522
      PAS_3; PAS fold
      cd19733
      Location:146 → 222
      bHLH-PAS_trachealess_like; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster protein trachealess and similar proteins

    3. XM_031931823.1 → XP_031787683.1  protein trachealess isoform X2

      UniProtKB/TrEMBL
      A0A7M7QJA6
      Conserved Domains (3) summary
      smart00091
      Location:247 → 303
      PAS; PAS domain
      pfam08447
      Location:444 → 531
      PAS_3; PAS fold
      cd19733
      Location:146 → 222
      bHLH-PAS_trachealess_like; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster protein trachealess and similar proteins

    4. XM_031931822.1 → XP_031787682.1  protein trachealess isoform X1

      UniProtKB/TrEMBL
      A0A7M7QH63
      Conserved Domains (3) summary
      smart00091
      Location:247 → 303
      PAS; PAS domain
      pfam08447
      Location:444 → 531
      PAS_3; PAS fold
      cd19733
      Location:146 → 222
      bHLH-PAS_trachealess_like; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster protein trachealess and similar proteins

    5. XM_031931828.1 → XP_031787688.1  protein trachealess isoform X7

      UniProtKB/TrEMBL
      A0A7M7TAR2
      Conserved Domains (3) summary
      smart00091
      Location:125 → 181
      PAS; PAS domain
      pfam08447
      Location:322 → 409
      PAS_3; PAS fold
      cd19733
      Location:24 → 100
      bHLH-PAS_trachealess_like; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster protein trachealess and similar proteins

    6. XM_031931827.1 → XP_031787687.1  protein trachealess isoform X6

      UniProtKB/TrEMBL
      A0A7M7QHX7
      Conserved Domains (3) summary
      smart00091
      Location:147 → 203
      PAS; PAS domain
      pfam08447
      Location:344 → 431
      PAS_3; PAS fold
      cd19733
      Location:46 → 122
      bHLH-PAS_trachealess_like; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster protein trachealess and similar proteins

    7. XM_031931826.1 → XP_031787686.1  protein trachealess isoform X5

      UniProtKB/TrEMBL
      A0A7M7TAT1
      Conserved Domains (3) summary
      smart00091
      Location:168 → 224
      PAS; PAS domain
      pfam08447
      Location:365 → 452
      PAS_3; PAS fold
      cd19733
      Location:67 → 143
      bHLH-PAS_trachealess_like; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in Drosophila melanogaster protein trachealess and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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