U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC100115646 biglycan [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100115646, updated on 14-Dec-2023

    Summary

    Gene symbol
    LOC100115646
    Gene description
    biglycan
    See related
    NASONIABASE:NV12589
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 4 Unlocalized Scaffold NC_045760.1 (32926956..32960103, complement)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 4 Unlocalized Scaffold NW_022279647.1 (8384337..8417422, complement)

    Chromosome 4 - NC_045760.1Genomic Context describing neighboring genes Neighboring gene acetylcholinesterase 1 Neighboring gene RCC1 and BTB domain-containing protein 1 Neighboring gene protein lethal(2)denticleless Neighboring gene 17-beta-hydroxysteroid dehydrogenase 13 Neighboring gene uncharacterized LOC107982175 Neighboring gene symplekin

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045760.1 Reference Nvit_psr_1.1

      Range
      32926956..32960103 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003428059.5XP_003428107.1  biglycan isoform X1

      See identical proteins and their annotated locations for XP_003428107.1

      UniProtKB/TrEMBL
      A0A7M7G5H1
      Conserved Domains (3) summary
      cd00116
      Location:87233
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:7194
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:166222
      LRR_8; Leucine rich repeat
    2. XM_001600263.6XP_001600313.2  biglycan isoform X1

      See identical proteins and their annotated locations for XP_001600313.2

      UniProtKB/TrEMBL
      A0A7M7G5H1
      Conserved Domains (3) summary
      cd00116
      Location:87233
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:7194
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:166222
      LRR_8; Leucine rich repeat
    3. XM_032598870.1XP_032454761.1  biglycan isoform X2

      UniProtKB/TrEMBL
      A0A7M7J296
      Conserved Domains (3) summary
      TIGR00864
      Location:186307
      PCC; polycystin cation channel protein
      sd00033
      Location:6588
      LRR_RI; leucine-rich repeat [structural motif]
      cd21340
      Location:51216
      PPP1R42; protein phosphatase 1 regulatory subunit 42
    4. XM_008216350.4XP_008214572.1  biglycan isoform X1

      See identical proteins and their annotated locations for XP_008214572.1

      UniProtKB/TrEMBL
      A0A7M7G5H1
      Conserved Domains (3) summary
      cd00116
      Location:87233
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:7194
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:166222
      LRR_8; Leucine rich repeat
    5. XM_016989782.3XP_016845271.1  biglycan isoform X2

      UniProtKB/TrEMBL
      A0A7M7J296
      Conserved Domains (3) summary
      TIGR00864
      Location:186307
      PCC; polycystin cation channel protein
      sd00033
      Location:6588
      LRR_RI; leucine-rich repeat [structural motif]
      cd21340
      Location:51216
      PPP1R42; protein phosphatase 1 regulatory subunit 42