U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    Hcf Host cell factor [ Nasonia vitripennis (jewel wasp) ]

    Gene ID: 100122420, updated on 10-Oct-2024
    Gene symbol
    Hcf
    Gene description
    Host cell factor
    See related
    NASONIABASE:NV11982
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Nasonia vitripennis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Pteromalidae; Pteromalinae; Nasonia
    Orthologs
    fruit fly honey bee all
    NEW
    Try the new Gene table
    Try the new Transcript table
    See Hcf in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Nvit_psr_1.1 (GCF_009193385.2) 3 Unlocalized Scaffold NC_045759.1 (7784087..7792922)
    103 previous assembly Nvit_psr_1 (GCF_009193385.1) 3 Unlocalized Scaffold NW_022279627.1 (5344360..5353490, complement)

    Chromosome 3 - NC_045759.1Genomic Context describing neighboring genes Neighboring gene epidermal growth factor receptor kinase substrate 8-like protein 1 Neighboring gene endoplasmic reticulum oxidoreductin-1-like protein Neighboring gene Ubiquinol-cytochrome c reductase ubiquinone-binding protein Neighboring gene DIS3-like exonuclease 2 Neighboring gene cell division cycle 20 protein fzy Neighboring gene membrane-associated ring finger (C3HC4) 6 Neighboring gene centromere protein L-like

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Functional and evolutionary insights from the genomes of three parasitoid Nasonia species. Werren JH, et al. Science, 2010 Jan 15. PMID 20075255, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables transcription coactivator activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of histone methyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    host cell factor
    Names
    host cell factor 1

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Nasonia vitripennis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Nvit_psr_1.1

    Genomic

    1. NC_045759.1 Reference Nvit_psr_1.1

      Range
      7784087..7792922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031926837.2 → XP_031782697.1  host cell factor isoform X2

      UniProtKB/TrEMBL
      A0A7M7QTH6
      Conserved Domains (5) summary
      PLN02193
      Location:7 → 310
      PLN02193; nitrile-specifier protein
      COG5271
      Location:1018 → 1310
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1177 → 1347
      rne; ribonuclease E; Reviewed
      cd00063
      Location:1452 → 1481
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:188 → 239
      Kelch; KELCH repeat [structural motif]

    2. XM_031926836.2 → XP_031782696.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A7M7Q8H9
      Conserved Domains (5) summary
      PLN02193
      Location:7 → 310
      PLN02193; nitrile-specifier protein
      COG5271
      Location:1020 → 1312
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1179 → 1349
      rne; ribonuclease E; Reviewed
      cd00063
      Location:1454 → 1483
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:188 → 239
      Kelch; KELCH repeat [structural motif]

    3. XM_031926834.2 → XP_031782694.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A7M7Q8H9
      Conserved Domains (5) summary
      PLN02193
      Location:7 → 310
      PLN02193; nitrile-specifier protein
      COG5271
      Location:1020 → 1312
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1179 → 1349
      rne; ribonuclease E; Reviewed
      cd00063
      Location:1454 → 1483
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:188 → 239
      Kelch; KELCH repeat [structural motif]

    4. XM_031926835.1 → XP_031782695.1  host cell factor isoform X1

      UniProtKB/TrEMBL
      A0A7M7Q8H9
      Conserved Domains (5) summary
      PLN02193
      Location:7 → 310
      PLN02193; nitrile-specifier protein
      COG5271
      Location:1020 → 1312
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1179 → 1349
      rne; ribonuclease E; Reviewed
      cd00063
      Location:1454 → 1483
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:188 → 239
      Kelch; KELCH repeat [structural motif]

    5. XM_032598560.1 → XP_032454451.1  host cell factor isoform X2

      UniProtKB/TrEMBL
      A0A7M7QTH6
      Conserved Domains (5) summary
      PLN02193
      Location:7 → 310
      PLN02193; nitrile-specifier protein
      COG5271
      Location:1018 → 1310
      MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
      PRK10811
      Location:1177 → 1347
      rne; ribonuclease E; Reviewed
      cd00063
      Location:1452 → 1481
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      sd00038
      Location:188 → 239
      Kelch; KELCH repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials