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    LOC725744 ubiquitin thioesterase otubain-like [ Apis mellifera (honey bee) ]

    Gene ID: 725744, updated on 2-Oct-2024
    Gene symbol
    LOC725744
    Gene description
    ubiquitin thioesterase otubain-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Apis mellifera
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
    Also known as
    GB16420; GB47842
    Orthologs
    fruit fly all
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    See LOC725744 in Genome Data Viewer
    Location:
    chromosome: LG5
    Exon count:
    5
    Annotation release Status Assembly LG Location
    104 current Amel_HAv3.1 (GCF_003254395.2) LG5 NC_037642.1 (12094323..12095855)
    103 previous assembly Amel_4.5 (GCF_000002195.4) LG5 NC_007074.3 (12313302..12314824, complement)

    Linkage Group LG5 - NC_037642.1Genomic Context describing neighboring genes Neighboring gene dnaJ homolog dnj-5 Neighboring gene DNA polymerase epsilon subunit 4 Neighboring gene BLOC-1 related complex subunit 7 Neighboring gene uncharacterized LOC100576559

    Go to nucleotide: Graphics FASTA GenBank

    Related articles in PubMed

    1. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
    2. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
    3. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein K48-linked deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Preferred Names
    ubiquitin thioesterase otubain-like

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Amel_HAv3.1 Primary Assembly

    Genomic

    1. NC_037642.1 Reference Amel_HAv3.1 Primary Assembly

      Range
      12094323..12095855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006569491.3 → XP_006569554.2  ubiquitin thioesterase otubain-like

      UniProtKB/TrEMBL
      A0A7M7GXA2, A0A8B6Z8E0
      Conserved Domains (1) summary
      pfam10275
      Location:32 → 264
      Peptidase_C65; Peptidase C65 Otubain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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